Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
KRT39Q6A163 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.99■□□□□ 0.79
KRT39Q6A163 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.98■□□□□ 0.79
KRT39Q6A163 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
KRT39Q6A163 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
KRT39Q6A163 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.98■□□□□ 0.79
KRT39Q6A163 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.98■□□□□ 0.79
KRT39Q6A163 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.98■□□□□ 0.79
KRT39Q6A163 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.98■□□□□ 0.79
KRT39Q6A163 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 AC211429.1-201ENST00000415277 523 ntBASIC19.98■□□□□ 0.79
KRT39Q6A163 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.98■□□□□ 0.79
KRT39Q6A163 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.98■□□□□ 0.79
KRT39Q6A163 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.98■□□□□ 0.79
KRT39Q6A163 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.98■□□□□ 0.79
KRT39Q6A163 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 AC141257.4-201ENST00000634557 245 ntBASIC19.98■□□□□ 0.79
KRT39Q6A163 AC136944.6-201ENST00000634818 245 ntBASIC19.98■□□□□ 0.79
KRT39Q6A163 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
KRT39Q6A163 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.98■□□□□ 0.79
KRT39Q6A163 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
KRT39Q6A163 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.98■□□□□ 0.79
KRT39Q6A163 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
KRT39Q6A163 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.98■□□□□ 0.79
KRT39Q6A163 NEFHP1-201ENST00000412845 2629 ntBASIC19.98■□□□□ 0.79
KRT39Q6A163 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
KRT39Q6A163 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
KRT39Q6A163 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.97■□□□□ 0.79
KRT39Q6A163 RNF165-205ENST00000588679 2904 ntBASIC19.97■□□□□ 0.79
KRT39Q6A163 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.97■□□□□ 0.79
KRT39Q6A163 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.97■□□□□ 0.79
KRT39Q6A163 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
KRT39Q6A163 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 AP000523.1-201ENST00000398242 1049 ntBASIC19.97■□□□□ 0.79
KRT39Q6A163 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.97■□□□□ 0.79
KRT39Q6A163 AC010203.1-204ENST00000548782 407 ntBASIC19.97■□□□□ 0.79
KRT39Q6A163 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.97■□□□□ 0.79
KRT39Q6A163 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.97■□□□□ 0.79
KRT39Q6A163 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 AC005363.2-201ENST00000618631 242 ntBASIC19.97■□□□□ 0.79
KRT39Q6A163 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.97■□□□□ 0.79
KRT39Q6A163 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
KRT39Q6A163 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
KRT39Q6A163 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 AC113347.1-201ENST00000413321 391 ntBASIC19.96■□□□□ 0.79
KRT39Q6A163 LIN28AP1-201ENST00000429574 405 ntBASIC19.96■□□□□ 0.79
KRT39Q6A163 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT39Q6A163 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.96■□□□□ 0.79
KRT39Q6A163 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.96■□□□□ 0.79
KRT39Q6A163 MIR3180-4-201ENST00000582223 153 ntBASIC19.96■□□□□ 0.79
KRT39Q6A163 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT39Q6A163 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
KRT39Q6A163 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.96■□□□□ 0.79
KRT39Q6A163 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms