Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC112777.1-201ENST00000540175 1423 ntBASIC17.57■□□□□ 0.4
LIM2P55344 HOXB1-202ENST00000577092 1414 ntBASIC17.57■□□□□ 0.4
LIM2P55344 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LIM2P55344 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.57■□□□□ 0.4
LIM2P55344 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.57■□□□□ 0.4
LIM2P55344 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.57■□□□□ 0.4
LIM2P55344 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LIM2P55344 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 KRT18P23-201ENST00000435622 1283 ntBASIC17.57■□□□□ 0.4
LIM2P55344 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
LIM2P55344 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.57■□□□□ 0.4
LIM2P55344 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.57■□□□□ 0.4
LIM2P55344 NEK4P2-201ENST00000580004 1012 ntBASIC17.57■□□□□ 0.4
LIM2P55344 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.57■□□□□ 0.4
LIM2P55344 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 MYC-208ENST00000641036 567 ntBASIC17.57■□□□□ 0.4
LIM2P55344 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.57■□□□□ 0.4
LIM2P55344 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
LIM2P55344 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.57■□□□□ 0.4
LIM2P55344 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.57■□□□□ 0.4
LIM2P55344 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 BICD1-207ENST00000551848 1962 ntBASIC17.57■□□□□ 0.4
LIM2P55344 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.56■□□□□ 0.4
LIM2P55344 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.56■□□□□ 0.4
LIM2P55344 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.56■□□□□ 0.4
LIM2P55344 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.56■□□□□ 0.4
LIM2P55344 KRT8P7-201ENST00000533003 1432 ntBASIC17.56■□□□□ 0.4
LIM2P55344 AC026471.1-201ENST00000564629 3026 ntBASIC17.56■□□□□ 0.4
LIM2P55344 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.56■□□□□ 0.4
LIM2P55344 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.56■□□□□ 0.4
LIM2P55344 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.56■□□□□ 0.4
LIM2P55344 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.56■□□□□ 0.4
LIM2P55344 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.56■□□□□ 0.4
LIM2P55344 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
LIM2P55344 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.56■□□□□ 0.4
LIM2P55344 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 AC112497.1-201ENST00000624824 639 ntBASIC17.56■□□□□ 0.4
LIM2P55344 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.56■□□□□ 0.4
LIM2P55344 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.56■□□□□ 0.4
LIM2P55344 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.56■□□□□ 0.4
LIM2P55344 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIM2P55344 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
LIM2P55344 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIM2P55344 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.55■□□□□ 0.4
LIM2P55344 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.55■□□□□ 0.4
LIM2P55344 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIM2P55344 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
LIM2P55344 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.55■□□□□ 0.4
LIM2P55344 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIM2P55344 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.55■□□□□ 0.4
LIM2P55344 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.55■□□□□ 0.4
LIM2P55344 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LIM2P55344 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.55■□□□□ 0.4
LIM2P55344 KRT18P57-201ENST00000443599 1254 ntBASIC17.55■□□□□ 0.4
LIM2P55344 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIM2P55344 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIM2P55344 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.55■□□□□ 0.4
LIM2P55344 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.55■□□□□ 0.4
LIM2P55344 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.55■□□□□ 0.4
LIM2P55344 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 KRT8P50-201ENST00000562022 1438 ntBASIC17.55■□□□□ 0.4
LIM2P55344 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIM2P55344 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms