Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGCS2P54868 AC093484.2-201ENST00000580996 2166 ntBASIC21.36■■□□□ 1.01
HMGCS2P54868 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
HMGCS2P54868 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HMGCS2P54868 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGCS2P54868 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGCS2P54868 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGCS2P54868 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGCS2P54868 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.35■■□□□ 1.01
HMGCS2P54868 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.35■■□□□ 1.01
HMGCS2P54868 KRT18P41-201ENST00000518924 1277 ntBASIC21.35■■□□□ 1.01
HMGCS2P54868 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
HMGCS2P54868 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.35■■□□□ 1.01
HMGCS2P54868 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HMGCS2P54868 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGCS2P54868 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGCS2P54868 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.34■■□□□ 1.01
HMGCS2P54868 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGCS2P54868 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HMGCS2P54868 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.34■■□□□ 1.01
HMGCS2P54868 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGCS2P54868 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGCS2P54868 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGCS2P54868 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
HMGCS2P54868 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.34■■□□□ 1.01
HMGCS2P54868 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
HMGCS2P54868 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGCS2P54868 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HMGCS2P54868 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGCS2P54868 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGCS2P54868 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGCS2P54868 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGCS2P54868 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGCS2P54868 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGCS2P54868 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGCS2P54868 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.33■■□□□ 1.01
HMGCS2P54868 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGCS2P54868 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGCS2P54868 AP000593.1-201ENST00000393668 712 ntBASIC21.33■■□□□ 1.01
HMGCS2P54868 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
HMGCS2P54868 AL590627.1-203ENST00000421194 1026 ntBASIC21.33■■□□□ 1.01
HMGCS2P54868 MOK-208ENST00000519058 917 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGCS2P54868 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGCS2P54868 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
HMGCS2P54868 GPALPP1-207ENST00000611650 899 ntBASIC21.33■■□□□ 1.01
HMGCS2P54868 BX640515.1-201ENST00000617215 977 ntBASIC21.33■■□□□ 1.01
HMGCS2P54868 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGCS2P54868 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGCS2P54868 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGCS2P54868 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1
HMGCS2P54868 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGCS2P54868 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGCS2P54868 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGCS2P54868 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
HMGCS2P54868 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGCS2P54868 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
HMGCS2P54868 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
HMGCS2P54868 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.32■■□□□ 1
HMGCS2P54868 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.32■■□□□ 1
HMGCS2P54868 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HMGCS2P54868 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
HMGCS2P54868 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGCS2P54868 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.32■■□□□ 1
HMGCS2P54868 TEX30-205ENST00000376029 959 ntTSL 2 BASIC21.32■■□□□ 1
HMGCS2P54868 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.32■■□□□ 1
HMGCS2P54868 POM121L3P-201ENST00000419331 1163 ntBASIC21.32■■□□□ 1
HMGCS2P54868 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGCS2P54868 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGCS2P54868 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC21.32■■□□□ 1
HMGCS2P54868 AL671883.3-201ENST00000603274 991 ntBASIC21.32■■□□□ 1
HMGCS2P54868 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.32■■□□□ 1
HMGCS2P54868 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
HMGCS2P54868 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGCS2P54868 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.32■■□□□ 1
HMGCS2P54868 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGCS2P54868 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.32■■□□□ 1
HMGCS2P54868 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
HMGCS2P54868 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.32■■□□□ 1
HMGCS2P54868 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.32■■□□□ 1
HMGCS2P54868 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGCS2P54868 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGCS2P54868 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
HMGCS2P54868 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGCS2P54868 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGCS2P54868 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.31■■□□□ 1
HMGCS2P54868 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
HMGCS2P54868 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGCS2P54868 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.31■■□□□ 1
HMGCS2P54868 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGCS2P54868 AC096582.2-201ENST00000510860 516 ntBASIC21.31■■□□□ 1
HMGCS2P54868 RNA5SP419-201ENST00000515908 135 ntBASIC21.31■■□□□ 1
HMGCS2P54868 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms