Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.32■□□□□ 0.84
CLCN3P51790 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCN3P51790 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCN3P51790 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.32■□□□□ 0.84
CLCN3P51790 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CLCN3P51790 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.32■□□□□ 0.84
CLCN3P51790 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.32■□□□□ 0.84
CLCN3P51790 AL450487.1-201ENST00000426799 995 ntBASIC20.32■□□□□ 0.84
CLCN3P51790 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.32■□□□□ 0.84
CLCN3P51790 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CLCN3P51790 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CLCN3P51790 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.32■□□□□ 0.84
CLCN3P51790 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCN3P51790 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLCN3P51790 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.32■□□□□ 0.84
CLCN3P51790 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.32■□□□□ 0.84
CLCN3P51790 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCN3P51790 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.32■□□□□ 0.84
CLCN3P51790 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCN3P51790 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.32■□□□□ 0.84
CLCN3P51790 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
CLCN3P51790 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CLCN3P51790 AC120498.9-201ENST00000339021 3867 ntBASIC20.31■□□□□ 0.84
CLCN3P51790 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 IGHGP-201ENST00000390555 1178 ntBASIC20.31■□□□□ 0.84
CLCN3P51790 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CLCN3P51790 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CLCN3P51790 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.31■□□□□ 0.84
CLCN3P51790 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.31■□□□□ 0.84
CLCN3P51790 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.31■□□□□ 0.84
CLCN3P51790 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.31■□□□□ 0.84
CLCN3P51790 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.31■□□□□ 0.84
CLCN3P51790 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.31■□□□□ 0.84
CLCN3P51790 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CLCN3P51790 GPR32P1-201ENST00000601788 811 ntBASIC20.31■□□□□ 0.84
CLCN3P51790 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.31■□□□□ 0.84
CLCN3P51790 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.31■□□□□ 0.84
CLCN3P51790 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CLCN3P51790 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCN3P51790 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.31■□□□□ 0.84
CLCN3P51790 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CLCN3P51790 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.3■□□□□ 0.84
CLCN3P51790 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.3■□□□□ 0.84
CLCN3P51790 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.3■□□□□ 0.84
CLCN3P51790 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.3■□□□□ 0.84
CLCN3P51790 TPSP2-201ENST00000561760 610 ntBASIC20.3■□□□□ 0.84
CLCN3P51790 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.3■□□□□ 0.84
CLCN3P51790 MIR3652-201ENST00000579335 131 ntBASIC20.3■□□□□ 0.84
CLCN3P51790 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.3■□□□□ 0.84
CLCN3P51790 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.3■□□□□ 0.84
CLCN3P51790 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CLCN3P51790 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.3■□□□□ 0.84
CLCN3P51790 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CLCN3P51790 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCN3P51790 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.29■□□□□ 0.84
CLCN3P51790 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.29■□□□□ 0.84
CLCN3P51790 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CLCN3P51790 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CLCN3P51790 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.29■□□□□ 0.84
CLCN3P51790 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.29■□□□□ 0.84
CLCN3P51790 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.29■□□□□ 0.84
CLCN3P51790 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.29■□□□□ 0.84
CLCN3P51790 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
CLCN3P51790 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.29■□□□□ 0.84
CLCN3P51790 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CLCN3P51790 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCN3P51790 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLCN3P51790 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLCN3P51790 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CLCN3P51790 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
CLCN3P51790 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLCN3P51790 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms