Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CTCFP49711 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CTCFP49711 RCN1P2-201ENST00000398357 915 ntBASIC21.4■■□□□ 1.02
CTCFP49711 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21.4■■□□□ 1.02
CTCFP49711 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
CTCFP49711 AC007274.1-201ENST00000439805 662 ntBASIC21.4■■□□□ 1.02
CTCFP49711 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.4■■□□□ 1.02
CTCFP49711 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.4■■□□□ 1.02
CTCFP49711 AC104390.1-201ENST00000555663 520 ntBASIC21.4■■□□□ 1.02
CTCFP49711 PNMT-203ENST00000581428 677 ntTSL 2 BASIC21.4■■□□□ 1.02
CTCFP49711 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTCFP49711 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTCFP49711 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTCFP49711 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
CTCFP49711 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
CTCFP49711 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
CTCFP49711 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTCFP49711 KRT8P7-201ENST00000533003 1432 ntBASIC21.39■■□□□ 1.02
CTCFP49711 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
CTCFP49711 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTCFP49711 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTCFP49711 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.39■■□□□ 1.01
CTCFP49711 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTCFP49711 HLA-V-201ENST00000429037 534 ntBASIC21.39■■□□□ 1.01
CTCFP49711 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.39■■□□□ 1.01
CTCFP49711 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.39■■□□□ 1.01
CTCFP49711 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.39■■□□□ 1.01
CTCFP49711 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC21.39■■□□□ 1.01
CTCFP49711 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC21.39■■□□□ 1.01
CTCFP49711 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.39■■□□□ 1.01
CTCFP49711 AC005336.2-201ENST00000593183 939 ntBASIC21.39■■□□□ 1.01
CTCFP49711 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.39■■□□□ 1.01
CTCFP49711 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.39■■□□□ 1.01
CTCFP49711 AC024563.2-201ENST00000603282 481 ntBASIC21.39■■□□□ 1.01
CTCFP49711 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.01
CTCFP49711 AC008735.5-201ENST00000623544 497 ntBASIC21.39■■□□□ 1.01
CTCFP49711 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC21.39■■□□□ 1.01
CTCFP49711 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTCFP49711 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CTCFP49711 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.39■■□□□ 1.01
CTCFP49711 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTCFP49711 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.39■■□□□ 1.01
CTCFP49711 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.39■■□□□ 1.01
CTCFP49711 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTCFP49711 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.38■■□□□ 1.01
CTCFP49711 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.38■■□□□ 1.01
CTCFP49711 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.38■■□□□ 1.01
CTCFP49711 RAB17-203ENST00000409576 466 ntTSL 3 BASIC21.38■■□□□ 1.01
CTCFP49711 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC21.38■■□□□ 1.01
CTCFP49711 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC21.38■■□□□ 1.01
CTCFP49711 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC21.38■■□□□ 1.01
CTCFP49711 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.38■■□□□ 1.01
CTCFP49711 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.38■■□□□ 1.01
CTCFP49711 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.38■■□□□ 1.01
CTCFP49711 COPE-211ENST00000600932 1144 ntTSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.38■■□□□ 1.01
CTCFP49711 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.38■■□□□ 1.01
CTCFP49711 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CTCFP49711 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.38■■□□□ 1.01
CTCFP49711 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTCFP49711 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.37■■□□□ 1.01
CTCFP49711 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CTCFP49711 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.37■■□□□ 1.01
CTCFP49711 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.37■■□□□ 1.01
CTCFP49711 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.37■■□□□ 1.01
CTCFP49711 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 AC009533.2-201ENST00000543664 586 ntBASIC21.37■■□□□ 1.01
CTCFP49711 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.37■■□□□ 1.01
CTCFP49711 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.37■■□□□ 1.01
CTCFP49711 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.37■■□□□ 1.01
CTCFP49711 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CTCFP49711 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTCFP49711 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms