Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.11■□□□□ 0.01
CDX1P47902 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.11■□□□□ 0.01
CDX1P47902 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDX1P47902 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CDX1P47902 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDX1P47902 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDX1P47902 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDX1P47902 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDX1P47902 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDX1P47902 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 FSCN1P1-201ENST00000568912 1481 ntBASIC15.1■□□□□ 0.01
CDX1P47902 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.1■□□□□ 0.01
CDX1P47902 UNC93B2-201ENST00000285383 730 ntBASIC15.1■□□□□ 0.01
CDX1P47902 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
CDX1P47902 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.1■□□□□ 0.01
CDX1P47902 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 REXO1L10P-201ENST00000615707 1290 ntBASIC15.1■□□□□ 0.01
CDX1P47902 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDX1P47902 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDX1P47902 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDX1P47902 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.09■□□□□ 0.01
CDX1P47902 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CDX1P47902 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.09■□□□□ 0.01
CDX1P47902 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CDX1P47902 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.09■□□□□ 0.01
CDX1P47902 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 RPS20-210ENST00000523936 899 ntTSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.09■□□□□ 0.01
CDX1P47902 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC15.09■□□□□ 0.01
CDX1P47902 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CDX1P47902 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.09■□□□□ 0.01
CDX1P47902 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
CDX1P47902 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC15.09■□□□□ 0.01
CDX1P47902 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.09■□□□□ 0.01
CDX1P47902 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDX1P47902 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDX1P47902 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms