Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
NKX2-1P43699 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
NKX2-1P43699 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX2-1P43699 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC15.17■□□□□ 0.02
NKX2-1P43699 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.17■□□□□ 0.02
NKX2-1P43699 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX2-1P43699 AL137784.2-201ENST00000607332 1000 ntBASIC15.17■□□□□ 0.02
NKX2-1P43699 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
NKX2-1P43699 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX2-1P43699 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NKX2-1P43699 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
NKX2-1P43699 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
NKX2-1P43699 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX2-1P43699 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX2-1P43699 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
NKX2-1P43699 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
NKX2-1P43699 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.16■□□□□ 0.02
NKX2-1P43699 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
NKX2-1P43699 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
NKX2-1P43699 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC15.16■□□□□ 0.02
NKX2-1P43699 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.16■□□□□ 0.02
NKX2-1P43699 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 AL160286.2-201ENST00000567150 934 ntBASIC15.16■□□□□ 0.02
NKX2-1P43699 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC15.16■□□□□ 0.02
NKX2-1P43699 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX2-1P43699 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 REXO1L9P-201ENST00000604264 2108 ntBASIC15.16■□□□□ 0.02
NKX2-1P43699 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX2-1P43699 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NKX2-1P43699 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
NKX2-1P43699 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX2-1P43699 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX2-1P43699 FER1L4-210ENST00000615531 5998 ntBASIC15.15■□□□□ 0.02
NKX2-1P43699 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX2-1P43699 BX276092.2-201ENST00000417668 665 ntBASIC15.15■□□□□ 0.02
NKX2-1P43699 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
NKX2-1P43699 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
NKX2-1P43699 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX2-1P43699 AC133552.2-202ENST00000575694 574 ntBASIC15.15■□□□□ 0.02
NKX2-1P43699 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX2-1P43699 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC15.15■□□□□ 0.02
NKX2-1P43699 AC068587.9-201ENST00000641814 219 ntBASIC15.15■□□□□ 0.02
NKX2-1P43699 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX2-1P43699 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
NKX2-1P43699 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX2-1P43699 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX2-1P43699 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
NKX2-1P43699 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.14■□□□□ 0.01
NKX2-1P43699 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
NKX2-1P43699 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.14■□□□□ 0.01
NKX2-1P43699 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.14■□□□□ 0.01
NKX2-1P43699 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms