Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RFC3P40938 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.94■□□□□ 0.3
RFC3P40938 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
RFC3P40938 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.94■□□□□ 0.3
RFC3P40938 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.94■□□□□ 0.3
RFC3P40938 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFC3P40938 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFC3P40938 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFC3P40938 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.94■□□□□ 0.3
RFC3P40938 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFC3P40938 AC099343.3-201ENST00000605834 2503 ntBASIC16.94■□□□□ 0.3
RFC3P40938 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFC3P40938 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
RFC3P40938 AL161938.1-201ENST00000569833 2180 ntBASIC16.94■□□□□ 0.3
RFC3P40938 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.94■□□□□ 0.3
RFC3P40938 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.93■□□□□ 0.3
RFC3P40938 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.93■□□□□ 0.3
RFC3P40938 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 MIR564-202ENST00000385049 94 ntBASIC16.93■□□□□ 0.3
RFC3P40938 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RFC3P40938 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.93■□□□□ 0.3
RFC3P40938 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.93■□□□□ 0.3
RFC3P40938 MIR3917-201ENST00000580971 93 ntBASIC16.93■□□□□ 0.3
RFC3P40938 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RFC3P40938 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.93■□□□□ 0.3
RFC3P40938 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RFC3P40938 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
RFC3P40938 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFC3P40938 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
RFC3P40938 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.92■□□□□ 0.3
RFC3P40938 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 AC006333.2-201ENST00000607957 2099 ntBASIC16.92■□□□□ 0.3
RFC3P40938 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
RFC3P40938 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
RFC3P40938 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.92■□□□□ 0.3
RFC3P40938 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.92■□□□□ 0.3
RFC3P40938 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
RFC3P40938 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
RFC3P40938 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFC3P40938 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.92■□□□□ 0.3
RFC3P40938 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.92■□□□□ 0.3
RFC3P40938 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.92■□□□□ 0.3
RFC3P40938 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.92■□□□□ 0.3
RFC3P40938 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.91■□□□□ 0.3
RFC3P40938 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
RFC3P40938 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
RFC3P40938 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
RFC3P40938 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.91■□□□□ 0.3
RFC3P40938 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.91■□□□□ 0.3
RFC3P40938 AL136038.4-201ENST00000603606 1261 ntBASIC16.91■□□□□ 0.3
RFC3P40938 AC010240.3-201ENST00000607688 395 ntBASIC16.91■□□□□ 0.3
RFC3P40938 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.91■□□□□ 0.3
RFC3P40938 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.91■□□□□ 0.3
RFC3P40938 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFC3P40938 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms