Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.6■□□□□ 0.57
PTPN4P29074 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 LINC00896-202ENST00000609602 2128 ntBASIC18.59■□□□□ 0.57
PTPN4P29074 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.59■□□□□ 0.57
PTPN4P29074 UNC93B2-201ENST00000285383 730 ntBASIC18.59■□□□□ 0.57
PTPN4P29074 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 NIFKP9-201ENST00000419265 221 ntBASIC18.59■□□□□ 0.57
PTPN4P29074 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 RBM17P1-201ENST00000453646 1190 ntBASIC18.59■□□□□ 0.57
PTPN4P29074 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.59■□□□□ 0.57
PTPN4P29074 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.59■□□□□ 0.57
PTPN4P29074 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.59■□□□□ 0.57
PTPN4P29074 REXO1L10P-201ENST00000615707 1290 ntBASIC18.59■□□□□ 0.57
PTPN4P29074 CR392000.1-201ENST00000624770 1228 ntBASIC18.59■□□□□ 0.57
PTPN4P29074 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PTPN4P29074 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.59■□□□□ 0.57
PTPN4P29074 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.59■□□□□ 0.57
PTPN4P29074 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.59■□□□□ 0.57
PTPN4P29074 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTPN4P29074 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
PTPN4P29074 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.59■□□□□ 0.57
PTPN4P29074 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.59■□□□□ 0.57
PTPN4P29074 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN4P29074 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
PTPN4P29074 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN4P29074 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
PTPN4P29074 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN4P29074 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTPN4P29074 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
PTPN4P29074 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.58■□□□□ 0.57
PTPN4P29074 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN4P29074 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN4P29074 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN4P29074 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN4P29074 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN4P29074 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.58■□□□□ 0.56
PTPN4P29074 RCN1P1-201ENST00000400413 996 ntBASIC18.58■□□□□ 0.56
PTPN4P29074 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.58■□□□□ 0.56
PTPN4P29074 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.58■□□□□ 0.56
PTPN4P29074 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
PTPN4P29074 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.58■□□□□ 0.56
PTPN4P29074 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN4P29074 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PTPN4P29074 AC073592.3-201ENST00000625118 1834 ntBASIC18.58■□□□□ 0.56
PTPN4P29074 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PTPN4P29074 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTPN4P29074 SIRPAP1-201ENST00000448467 1770 ntBASIC18.58■□□□□ 0.56
PTPN4P29074 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.58■□□□□ 0.56
PTPN4P29074 KRT16P1-201ENST00000399124 1418 ntBASIC18.57■□□□□ 0.56
PTPN4P29074 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.57■□□□□ 0.56
PTPN4P29074 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.57■□□□□ 0.56
PTPN4P29074 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.57■□□□□ 0.56
PTPN4P29074 AC126763.1-201ENST00000552015 2118 ntBASIC18.57■□□□□ 0.56
PTPN4P29074 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.57■□□□□ 0.56
PTPN4P29074 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.57■□□□□ 0.56
PTPN4P29074 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.57■□□□□ 0.56
PTPN4P29074 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.57■□□□□ 0.56
PTPN4P29074 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.57■□□□□ 0.56
PTPN4P29074 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 AP006587.1-201ENST00000534129 1502 ntBASIC18.57■□□□□ 0.56
PTPN4P29074 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.57■□□□□ 0.56
PTPN4P29074 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PTPN4P29074 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms