Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
XRCC1P18887 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
XRCC1P18887 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.47■□□□□ 0.55
XRCC1P18887 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.47■□□□□ 0.55
XRCC1P18887 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.47■□□□□ 0.55
XRCC1P18887 AL590326.2-201ENST00000625139 305 ntBASIC18.47■□□□□ 0.55
XRCC1P18887 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 AC141257.4-201ENST00000634557 245 ntBASIC18.47■□□□□ 0.55
XRCC1P18887 AC136944.6-201ENST00000634818 245 ntBASIC18.47■□□□□ 0.55
XRCC1P18887 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
XRCC1P18887 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
XRCC1P18887 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
XRCC1P18887 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
XRCC1P18887 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
XRCC1P18887 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
XRCC1P18887 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
XRCC1P18887 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.46■□□□□ 0.55
XRCC1P18887 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.46■□□□□ 0.55
XRCC1P18887 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC1P18887 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.46■□□□□ 0.55
XRCC1P18887 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.46■□□□□ 0.55
XRCC1P18887 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
XRCC1P18887 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.46■□□□□ 0.55
XRCC1P18887 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.46■□□□□ 0.55
XRCC1P18887 AC006011.2-201ENST00000621313 1158 ntBASIC18.46■□□□□ 0.55
XRCC1P18887 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC1P18887 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.46■□□□□ 0.55
XRCC1P18887 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC1P18887 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.46■□□□□ 0.55
XRCC1P18887 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
XRCC1P18887 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC1P18887 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC1P18887 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC1P18887 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
XRCC1P18887 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
XRCC1P18887 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
XRCC1P18887 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
XRCC1P18887 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.45■□□□□ 0.54
XRCC1P18887 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.45■□□□□ 0.54
XRCC1P18887 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
XRCC1P18887 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.45■□□□□ 0.54
XRCC1P18887 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
XRCC1P18887 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.45■□□□□ 0.54
XRCC1P18887 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.45■□□□□ 0.54
XRCC1P18887 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 DUX4L26-201ENST00000489078 1255 ntBASIC18.45■□□□□ 0.54
XRCC1P18887 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
XRCC1P18887 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.45■□□□□ 0.54
XRCC1P18887 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.45■□□□□ 0.54
XRCC1P18887 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.45■□□□□ 0.54
XRCC1P18887 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.45■□□□□ 0.54
XRCC1P18887 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.45■□□□□ 0.54
XRCC1P18887 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.45■□□□□ 0.54
XRCC1P18887 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.45■□□□□ 0.54
XRCC1P18887 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
XRCC1P18887 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC1P18887 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.44■□□□□ 0.54
XRCC1P18887 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms