Protein–RNA interactions for Protein: P18846

ATF1, Cyclic AMP-dependent transcription factor ATF-1, humanhuman

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF1P18846 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ATF1P18846 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.28■□□□□ 0.2
ATF1P18846 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ATF1P18846 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATF1P18846 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.27■□□□□ 0.2
ATF1P18846 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ATF1P18846 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATF1P18846 AC138028.4-201ENST00000564984 1845 ntBASIC16.27■□□□□ 0.2
ATF1P18846 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
ATF1P18846 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
ATF1P18846 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.27■□□□□ 0.2
ATF1P18846 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ATF1P18846 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.27■□□□□ 0.2
ATF1P18846 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.27■□□□□ 0.2
ATF1P18846 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
ATF1P18846 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.27■□□□□ 0.2
ATF1P18846 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.27■□□□□ 0.2
ATF1P18846 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.27■□□□□ 0.2
ATF1P18846 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC16.27■□□□□ 0.2
ATF1P18846 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATF1P18846 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
ATF1P18846 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ATF1P18846 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.27■□□□□ 0.19
ATF1P18846 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.27■□□□□ 0.19
ATF1P18846 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.27■□□□□ 0.19
ATF1P18846 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ATF1P18846 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATF1P18846 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ATF1P18846 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
ATF1P18846 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.26■□□□□ 0.19
ATF1P18846 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 RCC2P6-201ENST00000526625 1557 ntBASIC16.26■□□□□ 0.19
ATF1P18846 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.26■□□□□ 0.19
ATF1P18846 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
ATF1P18846 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.26■□□□□ 0.19
ATF1P18846 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.26■□□□□ 0.19
ATF1P18846 ID1-201ENST00000376105 1233 ntBASIC16.26■□□□□ 0.19
ATF1P18846 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
ATF1P18846 Z85996.1-201ENST00000494644 937 ntBASIC16.26■□□□□ 0.19
ATF1P18846 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.26■□□□□ 0.19
ATF1P18846 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.26■□□□□ 0.19
ATF1P18846 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
ATF1P18846 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.26■□□□□ 0.19
ATF1P18846 EMC9-206ENST00000560403 872 ntTSL 2 BASIC16.26■□□□□ 0.19
ATF1P18846 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.26■□□□□ 0.19
ATF1P18846 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 AC106820.2-201ENST00000563775 3264 ntBASIC16.26■□□□□ 0.19
ATF1P18846 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ATF1P18846 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.26■□□□□ 0.19
ATF1P18846 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.26■□□□□ 0.19
ATF1P18846 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
ATF1P18846 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATF1P18846 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 HTR7P1-202ENST00000624664 4411 ntBASIC16.25■□□□□ 0.19
ATF1P18846 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
ATF1P18846 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.25■□□□□ 0.19
ATF1P18846 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
ATF1P18846 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.25■□□□□ 0.19
ATF1P18846 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
ATF1P18846 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 SIRPAP1-201ENST00000448467 1770 ntBASIC16.25■□□□□ 0.19
ATF1P18846 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
ATF1P18846 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
ATF1P18846 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.25■□□□□ 0.19
ATF1P18846 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.25■□□□□ 0.19
ATF1P18846 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF1P18846 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF1P18846 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms