Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.12■□□□□ 0.81
CHRNA1P02708 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
CHRNA1P02708 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CHRNA1P02708 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 MRPL3P1-201ENST00000400109 1033 ntBASIC20.12■□□□□ 0.81
CHRNA1P02708 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.12■□□□□ 0.81
CHRNA1P02708 VENTXP7-201ENST00000475503 772 ntBASIC20.12■□□□□ 0.81
CHRNA1P02708 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 AC011840.4-201ENST00000578471 627 ntBASIC20.12■□□□□ 0.81
CHRNA1P02708 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 AC099343.3-201ENST00000605834 2503 ntBASIC20.12■□□□□ 0.81
CHRNA1P02708 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHRNA1P02708 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CHRNA1P02708 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHRNA1P02708 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHRNA1P02708 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CHRNA1P02708 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHRNA1P02708 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHRNA1P02708 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CHRNA1P02708 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHRNA1P02708 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHRNA1P02708 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.11■□□□□ 0.81
CHRNA1P02708 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHRNA1P02708 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CHRNA1P02708 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.11■□□□□ 0.81
CHRNA1P02708 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.11■□□□□ 0.81
CHRNA1P02708 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CHRNA1P02708 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.11■□□□□ 0.81
CHRNA1P02708 AC083906.6-201ENST00000641366 219 ntBASIC20.11■□□□□ 0.81
CHRNA1P02708 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHRNA1P02708 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 NUS1P2-201ENST00000417358 873 ntBASIC20.1■□□□□ 0.81
CHRNA1P02708 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.1■□□□□ 0.81
CHRNA1P02708 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
CHRNA1P02708 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.1■□□□□ 0.81
CHRNA1P02708 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.1■□□□□ 0.81
CHRNA1P02708 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHRNA1P02708 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.09■□□□□ 0.81
CHRNA1P02708 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CHRNA1P02708 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CHRNA1P02708 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 MIR149-201ENST00000384879 89 ntBASIC20.09■□□□□ 0.81
CHRNA1P02708 MINOS1P3-201ENST00000457048 203 ntBASIC20.09■□□□□ 0.81
CHRNA1P02708 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.09■□□□□ 0.81
CHRNA1P02708 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.09■□□□□ 0.81
CHRNA1P02708 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.09■□□□□ 0.81
CHRNA1P02708 AF238378.1-201ENST00000526806 358 ntBASIC20.09■□□□□ 0.81
CHRNA1P02708 REXO1L6P-202ENST00000619970 1078 ntBASIC20.09■□□□□ 0.81
CHRNA1P02708 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHRNA1P02708 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
CHRNA1P02708 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CHRNA1P02708 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHRNA1P02708 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CHRNA1P02708 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHRNA1P02708 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHRNA1P02708 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
CHRNA1P02708 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.08■□□□□ 0.81
CHRNA1P02708 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.08■□□□□ 0.81
CHRNA1P02708 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.08■□□□□ 0.81
CHRNA1P02708 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.08■□□□□ 0.81
CHRNA1P02708 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.08■□□□□ 0.81
CHRNA1P02708 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.08■□□□□ 0.81
CHRNA1P02708 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHRNA1P02708 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CHRNA1P02708 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.8
CHRNA1P02708 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHRNA1P02708 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.08■□□□□ 0.8
CHRNA1P02708 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CHRNA1P02708 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms