Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC25.99■■□□□ 1.75
NPHP4O75161 NKAPP1-205ENST00000585790 367 ntBASIC25.99■■□□□ 1.75
NPHP4O75161 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP4O75161 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC25.99■■□□□ 1.75
NPHP4O75161 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP4O75161 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC25.99■■□□□ 1.75
NPHP4O75161 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP4O75161 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC25.99■■□□□ 1.75
NPHP4O75161 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC25.99■■□□□ 1.75
NPHP4O75161 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP4O75161 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC25.98■■□□□ 1.75
NPHP4O75161 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC25.98■■□□□ 1.75
NPHP4O75161 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NPHP4O75161 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
NPHP4O75161 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC25.98■■□□□ 1.75
NPHP4O75161 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC25.98■■□□□ 1.75
NPHP4O75161 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC25.98■■□□□ 1.75
NPHP4O75161 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC25.98■■□□□ 1.75
NPHP4O75161 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
NPHP4O75161 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC25.98■■□□□ 1.75
NPHP4O75161 MED17-221ENST00000639724 2317 ntTSL 5 BASIC25.98■■□□□ 1.75
NPHP4O75161 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC25.98■■□□□ 1.75
NPHP4O75161 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
NPHP4O75161 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 SPCS2P1-201ENST00000561636 679 ntBASIC25.97■■□□□ 1.75
NPHP4O75161 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC25.97■■□□□ 1.75
NPHP4O75161 AC011467.4-201ENST00000594891 528 ntBASIC25.97■■□□□ 1.75
NPHP4O75161 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
NPHP4O75161 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC25.97■■□□□ 1.75
NPHP4O75161 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC25.97■■□□□ 1.75
NPHP4O75161 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC25.97■■□□□ 1.75
NPHP4O75161 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
NPHP4O75161 MIR770-201ENST00000390219 98 ntBASIC25.97■■□□□ 1.75
NPHP4O75161 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC25.97■■□□□ 1.75
NPHP4O75161 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC25.97■■□□□ 1.75
NPHP4O75161 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC25.97■■□□□ 1.75
NPHP4O75161 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP4O75161 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
NPHP4O75161 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
NPHP4O75161 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
NPHP4O75161 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC25.96■■□□□ 1.75
NPHP4O75161 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC25.96■■□□□ 1.75
NPHP4O75161 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC25.96■■□□□ 1.75
NPHP4O75161 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC25.96■■□□□ 1.75
NPHP4O75161 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 SYS1-203ENST00000414310 795 ntTSL 3 BASIC25.96■■□□□ 1.75
NPHP4O75161 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC25.96■■□□□ 1.75
NPHP4O75161 WBP2-203ENST00000433525 928 ntTSL 2 BASIC25.96■■□□□ 1.75
NPHP4O75161 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC25.96■■□□□ 1.75
NPHP4O75161 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP4O75161 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC25.95■■□□□ 1.75
NPHP4O75161 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
NPHP4O75161 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC25.95■■□□□ 1.74
NPHP4O75161 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
NPHP4O75161 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
NPHP4O75161 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
NPHP4O75161 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC25.95■■□□□ 1.74
NPHP4O75161 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
NPHP4O75161 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
NPHP4O75161 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
NPHP4O75161 KRT18P27-201ENST00000427733 1299 ntBASIC25.95■■□□□ 1.74
NPHP4O75161 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC25.95■■□□□ 1.74
NPHP4O75161 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC25.95■■□□□ 1.74
NPHP4O75161 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC25.95■■□□□ 1.74
NPHP4O75161 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC25.95■■□□□ 1.74
NPHP4O75161 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
NPHP4O75161 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC25.95■■□□□ 1.74
NPHP4O75161 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
NPHP4O75161 NARF-204ENST00000390006 1766 ntTSL 2 BASIC25.95■■□□□ 1.74
NPHP4O75161 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NPHP4O75161 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
NPHP4O75161 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
NPHP4O75161 TCF3P1-201ENST00000423021 1937 ntBASIC25.94■■□□□ 1.74
NPHP4O75161 AC099778.1-201ENST00000568593 1911 ntBASIC25.94■■□□□ 1.74
NPHP4O75161 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
NPHP4O75161 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NPHP4O75161 CNN2P11-201ENST00000429351 262 ntBASIC25.94■■□□□ 1.74
NPHP4O75161 KRT18P2-201ENST00000447938 1258 ntBASIC25.94■■□□□ 1.74
NPHP4O75161 COX20P2-201ENST00000452636 358 ntBASIC25.94■■□□□ 1.74
NPHP4O75161 AP002472.1-201ENST00000577490 586 ntBASIC25.94■■□□□ 1.74
NPHP4O75161 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC25.94■■□□□ 1.74
NPHP4O75161 AC106028.4-201ENST00000614509 607 ntBASIC25.94■■□□□ 1.74
NPHP4O75161 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NPHP4O75161 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
NPHP4O75161 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
NPHP4O75161 AC002310.6-201ENST00000624451 1377 ntBASIC25.94■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms