Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.55■□□□□ 0.56
SHOX2O60902 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
SHOX2O60902 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 AC106886.4-201ENST00000623557 2502 ntBASIC18.55■□□□□ 0.56
SHOX2O60902 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.55■□□□□ 0.56
SHOX2O60902 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.55■□□□□ 0.56
SHOX2O60902 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.55■□□□□ 0.56
SHOX2O60902 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.55■□□□□ 0.56
SHOX2O60902 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.55■□□□□ 0.56
SHOX2O60902 TSPY23P-201ENST00000440136 739 ntBASIC18.55■□□□□ 0.56
SHOX2O60902 RARRES2P4-201ENST00000514074 484 ntBASIC18.55■□□□□ 0.56
SHOX2O60902 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 MYCNOS-205ENST00000641950 531 ntBASIC18.55■□□□□ 0.56
SHOX2O60902 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SHOX2O60902 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 AL138688.1-201ENST00000624851 1594 ntBASIC18.55■□□□□ 0.56
SHOX2O60902 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOX2O60902 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.55■□□□□ 0.56
SHOX2O60902 PCDHA14-201ENST00000506751 2298 ntBASIC18.54■□□□□ 0.56
SHOX2O60902 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
SHOX2O60902 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SHOX2O60902 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.54■□□□□ 0.56
SHOX2O60902 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.54■□□□□ 0.56
SHOX2O60902 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.54■□□□□ 0.56
SHOX2O60902 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SHOX2O60902 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOX2O60902 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 PCDHA1-201ENST00000378133 2726 ntBASIC18.53■□□□□ 0.56
SHOX2O60902 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SHOX2O60902 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SHOX2O60902 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.53■□□□□ 0.56
SHOX2O60902 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SHOX2O60902 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.53■□□□□ 0.56
SHOX2O60902 AC103702.1-201ENST00000548801 2630 ntBASIC18.53■□□□□ 0.56
SHOX2O60902 CYP2T3P-201ENST00000601990 817 ntBASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms