Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.85■□□□□ 0.45
SLC28A1O00337 AL133373.2-201ENST00000623187 2828 ntBASIC17.85■□□□□ 0.45
SLC28A1O00337 AC026471.1-201ENST00000564629 3026 ntBASIC17.85■□□□□ 0.45
SLC28A1O00337 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.85■□□□□ 0.45
SLC28A1O00337 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC28A1O00337 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.85■□□□□ 0.45
SLC28A1O00337 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC28A1O00337 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC28A1O00337 AC116562.2-201ENST00000507042 360 ntBASIC17.85■□□□□ 0.45
SLC28A1O00337 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SLC28A1O00337 SLC25A1P4-201ENST00000567977 778 ntBASIC17.85■□□□□ 0.45
SLC28A1O00337 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC28A1O00337 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SLC28A1O00337 AC093677.2-201ENST00000600169 1863 ntBASIC17.85■□□□□ 0.45
SLC28A1O00337 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.85■□□□□ 0.45
SLC28A1O00337 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SLC28A1O00337 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC28A1O00337 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
SLC28A1O00337 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 AC068880.1-201ENST00000507289 2297 ntBASIC17.84■□□□□ 0.45
SLC28A1O00337 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.84■□□□□ 0.45
SLC28A1O00337 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SLC28A1O00337 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.84■□□□□ 0.45
SLC28A1O00337 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SLC28A1O00337 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 MFAP1P1-201ENST00000442257 1255 ntBASIC17.84■□□□□ 0.45
SLC28A1O00337 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.84■□□□□ 0.45
SLC28A1O00337 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.84■□□□□ 0.45
SLC28A1O00337 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SLC28A1O00337 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.84■□□□□ 0.45
SLC28A1O00337 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC28A1O00337 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SLC28A1O00337 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
SLC28A1O00337 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
SLC28A1O00337 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SLC28A1O00337 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SLC28A1O00337 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SLC28A1O00337 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
SLC28A1O00337 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SLC28A1O00337 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
SLC28A1O00337 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SLC28A1O00337 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SLC28A1O00337 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 NUDT16P1-203ENST00000513809 620 ntBASIC17.83■□□□□ 0.44
SLC28A1O00337 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.83■□□□□ 0.44
SLC28A1O00337 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.83■□□□□ 0.44
SLC28A1O00337 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.83■□□□□ 0.44
SLC28A1O00337 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
SLC28A1O00337 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.83■□□□□ 0.44
SLC28A1O00337 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.83■□□□□ 0.44
SLC28A1O00337 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.83■□□□□ 0.44
SLC28A1O00337 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 AC034236.2-201ENST00000606662 1610 ntBASIC17.83■□□□□ 0.44
SLC28A1O00337 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC28A1O00337 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SLC28A1O00337 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.82■□□□□ 0.44
SLC28A1O00337 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.82■□□□□ 0.44
SLC28A1O00337 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SLC28A1O00337 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
SLC28A1O00337 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC28A1O00337 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.82■□□□□ 0.44
SLC28A1O00337 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms