Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 POM121L13P-201ENST00000422362 380 ntBASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 AC004264.1-201ENST00000608354 794 ntBASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 MYC-208ENST00000641036 567 ntBASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 AC138028.4-201ENST00000564984 1845 ntBASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 AC112777.1-201ENST00000540175 1423 ntBASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.41□□□□□ -0.1
TRAV5A0A0B4J249 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 POU5F1P3-201ENST00000428824 1078 ntBASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 Z85996.1-201ENST00000494644 937 ntBASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 TK2-208ENST00000545043 1120 ntTSL 2 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 KRT8P11-201ENST00000409686 1436 ntBASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRAV5A0A0B4J249 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
TRAV5A0A0B4J249 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
TRAV5A0A0B4J249 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms