Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC15.03■□□□□ -0
FOXA2Q9Y261 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC15.02■□□□□ -0
FOXA2Q9Y261 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA2Q9Y261 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA2Q9Y261 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA2Q9Y261 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.02■□□□□ -0
FOXA2Q9Y261 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 AC018470.1-201ENST00000624790 3129 ntBASIC15.02■□□□□ -0
FOXA2Q9Y261 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA2Q9Y261 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC15.02■□□□□ -0
FOXA2Q9Y261 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.02■□□□□ -0
FOXA2Q9Y261 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.02■□□□□ -0
FOXA2Q9Y261 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA2Q9Y261 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA2Q9Y261 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA2Q9Y261 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC15.02■□□□□ -0
FOXA2Q9Y261 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.02■□□□□ -0
FOXA2Q9Y261 AC011506.1-201ENST00000474329 610 ntBASIC15.02■□□□□ -0
FOXA2Q9Y261 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.02■□□□□ -0
FOXA2Q9Y261 AC130371.2-201ENST00000619443 611 ntBASIC15.02■□□□□ -0
FOXA2Q9Y261 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
FOXA2Q9Y261 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 AL499627.1-201ENST00000569373 2188 ntBASIC15.02□□□□□ -0.01
FOXA2Q9Y261 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
FOXA2Q9Y261 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 UNC93B2-201ENST00000285383 730 ntBASIC15.01□□□□□ -0.01
FOXA2Q9Y261 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 MESTP1-201ENST00000404287 994 ntBASIC15.01□□□□□ -0.01
FOXA2Q9Y261 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 AL596275.1-201ENST00000423464 877 ntBASIC15.01□□□□□ -0.01
FOXA2Q9Y261 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 GRAMD4P8-201ENST00000605465 1115 ntBASIC15.01□□□□□ -0.01
FOXA2Q9Y261 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA2Q9Y261 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 KRT8P45-201ENST00000414328 1447 ntBASIC15□□□□□ -0.01
FOXA2Q9Y261 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 AR-207ENST00000612010 3896 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms