Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 KRT8P50-201ENST00000562022 1438 ntBASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 FLJ13224-201ENST00000313737 1514 ntBASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 MIR4651-201ENST00000582622 73 ntBASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LIMA1Q9UHB6 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.27■□□□□ 0.83
LIMA1Q9UHB6 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
LIMA1Q9UHB6 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
LIMA1Q9UHB6 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LIMA1Q9UHB6 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 LINC00896-202ENST00000609602 2128 ntBASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMA1Q9UHB6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 AC034236.2-201ENST00000606662 1610 ntBASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 MCCD1P1-208ENST00000445732 328 ntBASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 AC020916.1-201ENST00000587762 1774 ntBASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMA1Q9UHB6 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 FAM197Y1-201ENST00000421178 764 ntBASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 AL359736.2-201ENST00000621992 437 ntBASIC20.24■□□□□ 0.83
LIMA1Q9UHB6 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms