Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 GNAS-203ENST00000306120 1878 ntBASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 PCDHA12-202ENST00000613593 2588 ntBASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 AC008556.1-201ENST00000610908 2040 ntBASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 AC233263.1-201ENST00000578059 224 ntBASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCAL1Q9NZC9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 KRT17P3-201ENST00000420566 1262 ntBASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCAL1Q9NZC9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCAL1Q9NZC9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCAL1Q9NZC9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
SMARCAL1Q9NZC9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCAL1Q9NZC9 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCAL1Q9NZC9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCAL1Q9NZC9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 PRKY-204ENST00000533551 1019 ntBASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 MIR4651-201ENST00000582622 73 ntBASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms