Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 AP000593.1-201ENST00000393668 712 ntBASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 AL512604.3-201ENST00000569583 964 ntBASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 AC112497.1-201ENST00000624824 639 ntBASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 CYP51A1P1-201ENST00000492267 1507 ntBASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMC4Q9NTJ3 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 AC005363.2-201ENST00000618631 242 ntBASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 AL138966.2-201ENST00000621997 464 ntBASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC4Q9NTJ3 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.39
SMC4Q9NTJ3 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 AC113347.1-201ENST00000413321 391 ntBASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 KRT8P7-201ENST00000533003 1432 ntBASIC23.76■■□□□ 1.39
SMC4Q9NTJ3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 LINC01023-201ENST00000606054 436 ntBASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 AC141257.4-201ENST00000634557 245 ntBASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 AC136944.6-201ENST00000634818 245 ntBASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC23.75■■□□□ 1.39
SMC4Q9NTJ3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 TERF1P1-201ENST00000311003 1181 ntBASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 CD70-202ENST00000423145 881 ntTSL 2 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms