Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.91■□□□□ 0.78
SIX2Q9NPC8 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SIX2Q9NPC8 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.91■□□□□ 0.78
SIX2Q9NPC8 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 AC116562.4-202ENST00000641738 218 ntBASIC19.9■□□□□ 0.78
SIX2Q9NPC8 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX2Q9NPC8 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SIX2Q9NPC8 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 KRT18P23-201ENST00000435622 1283 ntBASIC19.89■□□□□ 0.77
SIX2Q9NPC8 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 EGLN1P1-201ENST00000531623 762 ntBASIC19.89■□□□□ 0.77
SIX2Q9NPC8 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 C2orf69P3-201ENST00000565542 1120 ntBASIC19.89■□□□□ 0.77
SIX2Q9NPC8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.89■□□□□ 0.77
SIX2Q9NPC8 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 AL596275.1-201ENST00000423464 877 ntBASIC19.88■□□□□ 0.77
SIX2Q9NPC8 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 AC010653.2-201ENST00000623505 997 ntBASIC19.88■□□□□ 0.77
SIX2Q9NPC8 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 AC008764.6-201ENST00000595909 2069 ntBASIC19.88■□□□□ 0.77
SIX2Q9NPC8 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX2Q9NPC8 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.87■□□□□ 0.77
SIX2Q9NPC8 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms