Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 BX323043.1-201ENST00000641006 1765 ntBASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 AC092647.4-201ENST00000457211 535 ntBASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 SEC1P-202ENST00000473944 940 ntBASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM39Q9HCM9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 KRT18P41-201ENST00000518924 1277 ntBASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 AC104390.1-201ENST00000555663 520 ntBASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM39Q9HCM9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 STARP1-201ENST00000397973 869 ntBASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 AC034232.1-201ENST00000506026 1064 ntBASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TRIM39Q9HCM9 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms