Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
MMP28Q9H239 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
MMP28Q9H239 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.37■□□□□ 0.21
MMP28Q9H239 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC16.37■□□□□ 0.21
MMP28Q9H239 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
MMP28Q9H239 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC16.37■□□□□ 0.21
MMP28Q9H239 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.37■□□□□ 0.21
MMP28Q9H239 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.37■□□□□ 0.21
MMP28Q9H239 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
MMP28Q9H239 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 PHGDH-210ENST00000641115 1638 ntBASIC16.37■□□□□ 0.21
MMP28Q9H239 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.37■□□□□ 0.21
MMP28Q9H239 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.37■□□□□ 0.21
MMP28Q9H239 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.37■□□□□ 0.21
MMP28Q9H239 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
MMP28Q9H239 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MMP28Q9H239 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 CICP6-201ENST00000457191 2729 ntBASIC16.36■□□□□ 0.21
MMP28Q9H239 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC16.36■□□□□ 0.21
MMP28Q9H239 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 NME6-213ENST00000451657 871 ntTSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 FAM201B-201ENST00000458407 597 ntBASIC16.36■□□□□ 0.21
MMP28Q9H239 AC097658.1-201ENST00000475555 843 ntBASIC16.36■□□□□ 0.21
MMP28Q9H239 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
MMP28Q9H239 AC011676.5-201ENST00000624864 2660 ntBASIC16.36■□□□□ 0.21
MMP28Q9H239 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.36■□□□□ 0.21
MMP28Q9H239 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MMP28Q9H239 AC022211.2-201ENST00000585075 2527 ntBASIC16.36■□□□□ 0.21
MMP28Q9H239 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 NKILA-202ENST00000614771 2598 ntBASIC16.35■□□□□ 0.21
MMP28Q9H239 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.35■□□□□ 0.21
MMP28Q9H239 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
MMP28Q9H239 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 HLA-G-202ENST00000376815 851 ntBASIC16.35■□□□□ 0.21
MMP28Q9H239 HLA-G-203ENST00000376818 1127 ntBASIC16.35■□□□□ 0.21
MMP28Q9H239 AC073210.2-201ENST00000430369 194 ntBASIC16.35■□□□□ 0.21
MMP28Q9H239 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.35■□□□□ 0.21
MMP28Q9H239 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.35■□□□□ 0.21
MMP28Q9H239 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
MMP28Q9H239 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC16.35■□□□□ 0.21
MMP28Q9H239 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.35■□□□□ 0.21
MMP28Q9H239 AL031963.3-201ENST00000606441 850 ntBASIC16.35■□□□□ 0.21
MMP28Q9H239 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 TBCB-214ENST00000629269 413 ntTSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 AC066615.1-201ENST00000640911 628 ntBASIC16.35■□□□□ 0.21
MMP28Q9H239 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
MMP28Q9H239 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.35■□□□□ 0.21
MMP28Q9H239 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 KRT8P20-201ENST00000423953 1409 ntBASIC16.35■□□□□ 0.21
MMP28Q9H239 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
MMP28Q9H239 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MMP28Q9H239 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.34■□□□□ 0.21
MMP28Q9H239 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms