Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC42Q96M95 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC42Q96M95 OR6D1P-202ENST00000641007 5290 ntBASIC20.03■□□□□ 0.8
CCDC42Q96M95 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC42Q96M95 NIFKP9-201ENST00000419265 221 ntBASIC20.03■□□□□ 0.8
CCDC42Q96M95 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC42Q96M95 AC091390.4-202ENST00000476426 537 ntBASIC20.03■□□□□ 0.8
CCDC42Q96M95 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC42Q96M95 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
CCDC42Q96M95 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC42Q96M95 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC42Q96M95 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC42Q96M95 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC42Q96M95 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CCDC42Q96M95 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC42Q96M95 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
CCDC42Q96M95 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC42Q96M95 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC42Q96M95 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC42Q96M95 AC124016.1-201ENST00000609552 612 ntBASIC20.02■□□□□ 0.8
CCDC42Q96M95 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC42Q96M95 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC42Q96M95 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC42Q96M95 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC42Q96M95 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
CCDC42Q96M95 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC42Q96M95 ESPNP-201ENST00000270691 2015 ntBASIC20.02■□□□□ 0.79
CCDC42Q96M95 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC42Q96M95 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.02■□□□□ 0.79
CCDC42Q96M95 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC42Q96M95 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.79
CCDC42Q96M95 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.02■□□□□ 0.79
CCDC42Q96M95 RCC2P3-201ENST00000418112 1537 ntBASIC20.02■□□□□ 0.79
CCDC42Q96M95 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC42Q96M95 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC42Q96M95 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC42Q96M95 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC42Q96M95 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC42Q96M95 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC42Q96M95 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 AC090192.1-201ENST00000517740 490 ntBASIC20.01■□□□□ 0.79
CCDC42Q96M95 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 AC110285.5-201ENST00000611501 352 ntBASIC20.01■□□□□ 0.79
CCDC42Q96M95 AC092666.2-201ENST00000613287 246 ntBASIC20.01■□□□□ 0.79
CCDC42Q96M95 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC42Q96M95 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 FZD10-202ENST00000539839 3282 ntBASIC20.01■□□□□ 0.79
CCDC42Q96M95 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC42Q96M95 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC42Q96M95 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.01■□□□□ 0.79
CCDC42Q96M95 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC42Q96M95 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 AC008556.1-201ENST00000610908 2040 ntBASIC20■□□□□ 0.79
CCDC42Q96M95 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20■□□□□ 0.79
CCDC42Q96M95 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CCDC42Q96M95 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20■□□□□ 0.79
CCDC42Q96M95 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20■□□□□ 0.79
CCDC42Q96M95 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
CCDC42Q96M95 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20■□□□□ 0.79
CCDC42Q96M95 AC004951.3-201ENST00000418645 1148 ntBASIC20■□□□□ 0.79
CCDC42Q96M95 PPP1R14BP5-201ENST00000440334 435 ntBASIC20■□□□□ 0.79
CCDC42Q96M95 AC133681.1-201ENST00000465482 601 ntBASIC20■□□□□ 0.79
CCDC42Q96M95 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20■□□□□ 0.79
CCDC42Q96M95 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20■□□□□ 0.79
CCDC42Q96M95 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC42Q96M95 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20■□□□□ 0.79
CCDC42Q96M95 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20■□□□□ 0.79
CCDC42Q96M95 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20■□□□□ 0.79
CCDC42Q96M95 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20■□□□□ 0.79
CCDC42Q96M95 MYLKP1-201ENST00000509077 1580 ntBASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms