Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 AC009947.1-201ENST00000444350 727 ntBASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 COX5A-206ENST00000568783 571 ntTSL 3 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 AL356309.3-201ENST00000624132 1934 ntBASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 AC008556.1-201ENST00000610908 2040 ntBASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 AC009533.2-201ENST00000543664 586 ntBASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 AC112777.1-201ENST00000540175 1423 ntBASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC1BQ8NDV3 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 AC064836.3-201ENST00000607928 673 ntBASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
SMC1BQ8NDV3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 RCC2P3-201ENST00000418112 1537 ntBASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 AP002414.3-201ENST00000589352 1468 ntBASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.92■■□□□ 1.1
SMC1BQ8NDV3 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms