Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.18■□□□□ 0.34
ZNF540Q8NDQ6 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 RPS2P4-201ENST00000476944 856 ntBASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ZNF540Q8NDQ6 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 MIR718-201ENST00000390190 70 ntBASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 AC008403.3-201ENST00000598924 454 ntBASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 FAM197Y4-202ENST00000622692 608 ntBASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms