Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC053503.5-201ENST00000601508 636 ntBASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN3Q8NCR9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 EEF1DP3-203ENST00000566025 782 ntBASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 AC083906.6-201ENST00000641366 219 ntBASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN3Q8NCR9 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms