Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 MIR939-201ENST00000401314 82 ntBASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 EEF1DP3-203ENST00000566025 782 ntBASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 MAG-206ENST00000597035 542 ntTSL 4 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 LINC02228-204ENST00000642115 2962 ntBASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 AP001094.4-201ENST00000579008 2176 ntBASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 AC053503.5-201ENST00000601508 636 ntBASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28AQ8IWP9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 AL136967.2-201ENST00000623968 743 ntBASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC28AQ8IWP9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms