Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 NEK4P2-201ENST00000580004 1012 ntBASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SH3RF1Q7Z6J0 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SH3RF1Q7Z6J0 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 AC004870.1-201ENST00000315132 882 ntBASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 KRT17P6-201ENST00000453795 1220 ntBASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 AC005082.1-201ENST00000413042 2259 ntBASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SH3RF1Q7Z6J0 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 HBZP1-201ENST00000354915 429 ntBASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 AC111152.3-201ENST00000569699 673 ntBASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 MIR3180-1-201ENST00000580374 94 ntBASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 MIR3180-3-201ENST00000584616 94 ntBASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 AC090164.3-201ENST00000610780 2143 ntBASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SH3RF1Q7Z6J0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SH3RF1Q7Z6J0 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms