Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC24.67■■□□□ 1.54
USP54Q70EL1 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USP54Q70EL1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC24.67■■□□□ 1.54
USP54Q70EL1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
USP54Q70EL1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
USP54Q70EL1 TEX30-205ENST00000376029 959 ntTSL 2 BASIC24.67■■□□□ 1.54
USP54Q70EL1 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC24.67■■□□□ 1.54
USP54Q70EL1 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC24.67■■□□□ 1.54
USP54Q70EL1 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC24.67■■□□□ 1.54
USP54Q70EL1 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC24.67■■□□□ 1.54
USP54Q70EL1 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC24.67■■□□□ 1.54
USP54Q70EL1 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
USP54Q70EL1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP54Q70EL1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC24.67■■□□□ 1.54
USP54Q70EL1 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC24.67■■□□□ 1.54
USP54Q70EL1 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP54Q70EL1 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC24.66■■□□□ 1.54
USP54Q70EL1 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 POM121L3P-201ENST00000419331 1163 ntBASIC24.66■■□□□ 1.54
USP54Q70EL1 FGFR3P6-201ENST00000457012 610 ntBASIC24.66■■□□□ 1.54
USP54Q70EL1 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
USP54Q70EL1 IL9RP2-201ENST00000423948 1312 ntBASIC24.66■■□□□ 1.54
USP54Q70EL1 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
USP54Q70EL1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC24.66■■□□□ 1.54
USP54Q70EL1 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC24.66■■□□□ 1.54
USP54Q70EL1 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 SLC25A1P1-201ENST00000528351 927 ntBASIC24.66■■□□□ 1.54
USP54Q70EL1 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USP54Q70EL1 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
USP54Q70EL1 AC008687.5-201ENST00000593746 558 ntBASIC24.66■■□□□ 1.54
USP54Q70EL1 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC24.65■■□□□ 1.54
USP54Q70EL1 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC24.65■■□□□ 1.54
USP54Q70EL1 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP54Q70EL1 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP54Q70EL1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC24.65■■□□□ 1.54
USP54Q70EL1 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
USP54Q70EL1 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP54Q70EL1 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP54Q70EL1 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP54Q70EL1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
USP54Q70EL1 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC24.65■■□□□ 1.54
USP54Q70EL1 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP54Q70EL1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
USP54Q70EL1 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
USP54Q70EL1 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP54Q70EL1 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
USP54Q70EL1 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC24.65■■□□□ 1.54
USP54Q70EL1 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
USP54Q70EL1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC24.65■■□□□ 1.54
USP54Q70EL1 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP54Q70EL1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
USP54Q70EL1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USP54Q70EL1 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC24.64■■□□□ 1.54
USP54Q70EL1 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USP54Q70EL1 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USP54Q70EL1 MINOS1P3-201ENST00000457048 203 ntBASIC24.64■■□□□ 1.53
USP54Q70EL1 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC24.64■■□□□ 1.53
USP54Q70EL1 PAM16-208ENST00000573553 722 ntTSL 2 BASIC24.64■■□□□ 1.53
USP54Q70EL1 AC148477.8-201ENST00000624298 468 ntBASIC24.64■■□□□ 1.53
USP54Q70EL1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC24.64■■□□□ 1.53
USP54Q70EL1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC24.64■■□□□ 1.53
USP54Q70EL1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC24.64■■□□□ 1.53
USP54Q70EL1 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC24.63■■□□□ 1.53
USP54Q70EL1 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
USP54Q70EL1 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USP54Q70EL1 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP54Q70EL1 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USP54Q70EL1 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
USP54Q70EL1 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USP54Q70EL1 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC24.63■■□□□ 1.53
USP54Q70EL1 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
USP54Q70EL1 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP54Q70EL1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USP54Q70EL1 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
USP54Q70EL1 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
USP54Q70EL1 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
USP54Q70EL1 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP54Q70EL1 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP54Q70EL1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
USP54Q70EL1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
USP54Q70EL1 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP54Q70EL1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC24.62■■□□□ 1.53
USP54Q70EL1 AP001269.4-201ENST00000609611 512 ntBASIC24.62■■□□□ 1.53
USP54Q70EL1 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP54Q70EL1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC24.62■■□□□ 1.53
USP54Q70EL1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
USP54Q70EL1 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC24.62■■□□□ 1.53
USP54Q70EL1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
USP54Q70EL1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP54Q70EL1 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP54Q70EL1 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.62■■□□□ 1.53
USP54Q70EL1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP54Q70EL1 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP54Q70EL1 RBM17P3-201ENST00000417687 1192 ntBASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms