Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP39Q53GS9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
USP39Q53GS9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
USP39Q53GS9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.82■□□□□ 0.6
USP39Q53GS9 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 MIR662-201ENST00000384847 95 ntBASIC18.82■□□□□ 0.6
USP39Q53GS9 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 MIR3917-201ENST00000580971 93 ntBASIC18.82■□□□□ 0.6
USP39Q53GS9 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.82■□□□□ 0.6
USP39Q53GS9 IFNL4P1-201ENST00000607083 540 ntBASIC18.82■□□□□ 0.6
USP39Q53GS9 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.82■□□□□ 0.6
USP39Q53GS9 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.82■□□□□ 0.6
USP39Q53GS9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
USP39Q53GS9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.82■□□□□ 0.6
USP39Q53GS9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
USP39Q53GS9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP39Q53GS9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.81■□□□□ 0.6
USP39Q53GS9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.81■□□□□ 0.6
USP39Q53GS9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.81■□□□□ 0.6
USP39Q53GS9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
USP39Q53GS9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.81■□□□□ 0.6
USP39Q53GS9 AL032819.2-201ENST00000624543 2162 ntBASIC18.81■□□□□ 0.6
USP39Q53GS9 AL391807.1-203ENST00000604392 2365 ntBASIC18.81■□□□□ 0.6
USP39Q53GS9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.81■□□□□ 0.6
USP39Q53GS9 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP39Q53GS9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.81■□□□□ 0.6
USP39Q53GS9 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.81■□□□□ 0.6
USP39Q53GS9 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
USP39Q53GS9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.81■□□□□ 0.6
USP39Q53GS9 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP39Q53GS9 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.81■□□□□ 0.6
USP39Q53GS9 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 AC091304.2-201ENST00000564639 760 ntBASIC18.81■□□□□ 0.6
USP39Q53GS9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
USP39Q53GS9 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
USP39Q53GS9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.81■□□□□ 0.6
USP39Q53GS9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.81■□□□□ 0.6
USP39Q53GS9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP39Q53GS9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP39Q53GS9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
USP39Q53GS9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.81■□□□□ 0.6
USP39Q53GS9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
USP39Q53GS9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.8■□□□□ 0.6
USP39Q53GS9 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.8■□□□□ 0.6
USP39Q53GS9 AP000867.3-201ENST00000524675 377 ntBASIC18.8■□□□□ 0.6
USP39Q53GS9 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.8■□□□□ 0.6
USP39Q53GS9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.8■□□□□ 0.6
USP39Q53GS9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USP39Q53GS9 KRT8P3-201ENST00000519669 1449 ntBASIC18.8■□□□□ 0.6
USP39Q53GS9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP39Q53GS9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.8■□□□□ 0.6
USP39Q53GS9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.8■□□□□ 0.6
USP39Q53GS9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP39Q53GS9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 TNXA-203ENST00000507684 2038 ntBASIC18.79■□□□□ 0.6
USP39Q53GS9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
USP39Q53GS9 AL020996.1-203ENST00000536896 2307 ntBASIC18.79■□□□□ 0.6
USP39Q53GS9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP39Q53GS9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.79■□□□□ 0.6
USP39Q53GS9 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.79■□□□□ 0.6
USP39Q53GS9 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 TSPY19P-201ENST00000418461 509 ntBASIC18.79■□□□□ 0.6
USP39Q53GS9 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms