Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SHMT2P34897 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.16■□□□□ 0.5
SHMT2P34897 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.16■□□□□ 0.5
SHMT2P34897 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.16■□□□□ 0.5
SHMT2P34897 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 AL133373.2-201ENST00000623187 2828 ntBASIC18.15■□□□□ 0.5
SHMT2P34897 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 PCDHB18P-201ENST00000524813 2368 ntBASIC18.15■□□□□ 0.5
SHMT2P34897 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 AC009947.2-201ENST00000444014 672 ntBASIC18.15■□□□□ 0.5
SHMT2P34897 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 COX11P1-201ENST00000489116 835 ntBASIC18.15■□□□□ 0.5
SHMT2P34897 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.15■□□□□ 0.5
SHMT2P34897 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.15■□□□□ 0.5
SHMT2P34897 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 AL031432.5-201ENST00000641059 760 ntBASIC18.15■□□□□ 0.5
SHMT2P34897 AC083906.6-201ENST00000641366 219 ntBASIC18.15■□□□□ 0.5
SHMT2P34897 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHMT2P34897 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHMT2P34897 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.15■□□□□ 0.5
SHMT2P34897 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHMT2P34897 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHMT2P34897 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHMT2P34897 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SHMT2P34897 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SHMT2P34897 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.14■□□□□ 0.49
SHMT2P34897 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SHMT2P34897 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.14■□□□□ 0.49
SHMT2P34897 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.14■□□□□ 0.49
SHMT2P34897 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.14■□□□□ 0.49
SHMT2P34897 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 AC008556.1-201ENST00000610908 2040 ntBASIC18.14■□□□□ 0.49
SHMT2P34897 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 HEIH-201ENST00000623091 1652 ntBASIC18.14■□□□□ 0.49
SHMT2P34897 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.14■□□□□ 0.49
SHMT2P34897 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.14■□□□□ 0.49
SHMT2P34897 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHMT2P34897 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
SHMT2P34897 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.13■□□□□ 0.49
SHMT2P34897 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SHMT2P34897 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
SHMT2P34897 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SHMT2P34897 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.13■□□□□ 0.49
SHMT2P34897 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.13■□□□□ 0.49
SHMT2P34897 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.13■□□□□ 0.49
SHMT2P34897 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.13■□□□□ 0.49
SHMT2P34897 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.13■□□□□ 0.49
SHMT2P34897 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms