Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCA1P28370 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SMARCA1P28370 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCA1P28370 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCA1P28370 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCA1P28370 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCA1P28370 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SMARCA1P28370 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
SMARCA1P28370 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCA1P28370 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.24■□□□□ 0.99
SMARCA1P28370 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCA1P28370 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.24■□□□□ 0.99
SMARCA1P28370 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
SMARCA1P28370 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.24■□□□□ 0.99
SMARCA1P28370 AC024563.2-201ENST00000603282 481 ntBASIC21.24■□□□□ 0.99
SMARCA1P28370 AC116407.4-201ENST00000623319 1061 ntBASIC21.24■□□□□ 0.99
SMARCA1P28370 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.24■□□□□ 0.99
SMARCA1P28370 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SMARCA1P28370 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.24■□□□□ 0.99
SMARCA1P28370 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCA1P28370 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 AC126763.1-201ENST00000552015 2118 ntBASIC21.23■□□□□ 0.99
SMARCA1P28370 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.23■□□□□ 0.99
SMARCA1P28370 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.23■□□□□ 0.99
SMARCA1P28370 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SMARCA1P28370 LITAF-220ENST00000620789 692 ntTSL 5 BASIC21.23■□□□□ 0.99
SMARCA1P28370 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.23■□□□□ 0.99
SMARCA1P28370 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
SMARCA1P28370 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.23■□□□□ 0.99
SMARCA1P28370 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.23■□□□□ 0.99
SMARCA1P28370 AC005332.1-201ENST00000577698 1310 ntBASIC21.23■□□□□ 0.99
SMARCA1P28370 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCA1P28370 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.22■□□□□ 0.99
SMARCA1P28370 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.22■□□□□ 0.99
SMARCA1P28370 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.22■□□□□ 0.99
SMARCA1P28370 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.22■□□□□ 0.99
SMARCA1P28370 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SMARCA1P28370 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.22■□□□□ 0.99
SMARCA1P28370 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.22■□□□□ 0.99
SMARCA1P28370 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.22■□□□□ 0.99
SMARCA1P28370 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.22■□□□□ 0.99
SMARCA1P28370 VENTXP5-201ENST00000523979 775 ntBASIC21.22■□□□□ 0.99
SMARCA1P28370 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.22■□□□□ 0.99
SMARCA1P28370 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.22■□□□□ 0.99
SMARCA1P28370 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC21.22■□□□□ 0.99
SMARCA1P28370 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.22■□□□□ 0.99
SMARCA1P28370 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.22■□□□□ 0.99
SMARCA1P28370 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCA1P28370 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.21■□□□□ 0.99
SMARCA1P28370 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.21■□□□□ 0.99
SMARCA1P28370 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
SMARCA1P28370 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC21.21■□□□□ 0.99
SMARCA1P28370 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.21■□□□□ 0.99
SMARCA1P28370 AC113404.2-201ENST00000507884 177 ntBASIC21.21■□□□□ 0.99
SMARCA1P28370 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.21■□□□□ 0.99
SMARCA1P28370 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SMARCA1P28370 AL162741.1-201ENST00000565563 1558 ntBASIC21.21■□□□□ 0.99
SMARCA1P28370 AL024508.2-201ENST00000607749 1894 ntBASIC21.21■□□□□ 0.99
SMARCA1P28370 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
SMARCA1P28370 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.21■□□□□ 0.99
SMARCA1P28370 WIZP1-201ENST00000531444 2299 ntBASIC21.21■□□□□ 0.99
SMARCA1P28370 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms