Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
COL8A1P27658 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.17■□□□□ 0.18
COL8A1P27658 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
COL8A1P27658 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.16■□□□□ 0.18
COL8A1P27658 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.16■□□□□ 0.18
COL8A1P27658 AC096582.2-201ENST00000510860 516 ntBASIC16.16■□□□□ 0.18
COL8A1P27658 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.16■□□□□ 0.18
COL8A1P27658 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.16■□□□□ 0.18
COL8A1P27658 FAM197Y3-203ENST00000618346 717 ntBASIC16.16■□□□□ 0.18
COL8A1P27658 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
COL8A1P27658 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.16■□□□□ 0.18
COL8A1P27658 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL8A1P27658 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.15■□□□□ 0.18
COL8A1P27658 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 HTR5BP-201ENST00000430851 1154 ntBASIC16.15■□□□□ 0.18
COL8A1P27658 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.15■□□□□ 0.18
COL8A1P27658 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.15■□□□□ 0.18
COL8A1P27658 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 AC145285.3-201ENST00000564603 959 ntBASIC16.15■□□□□ 0.18
COL8A1P27658 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.15■□□□□ 0.18
COL8A1P27658 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.15■□□□□ 0.18
COL8A1P27658 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.15■□□□□ 0.18
COL8A1P27658 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
COL8A1P27658 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.15■□□□□ 0.18
COL8A1P27658 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL8A1P27658 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 KRT18P28-201ENST00000453838 1332 ntBASIC16.15■□□□□ 0.18
COL8A1P27658 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL8A1P27658 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
COL8A1P27658 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL8A1P27658 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL8A1P27658 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
COL8A1P27658 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.14■□□□□ 0.17
COL8A1P27658 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
COL8A1P27658 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.14■□□□□ 0.17
COL8A1P27658 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.14■□□□□ 0.17
COL8A1P27658 KRT18P3-201ENST00000451602 1288 ntBASIC16.14■□□□□ 0.17
COL8A1P27658 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.14■□□□□ 0.17
COL8A1P27658 IGHV3-22-201ENST00000520721 359 ntBASIC16.14■□□□□ 0.17
COL8A1P27658 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.14■□□□□ 0.17
COL8A1P27658 AC034105.1-201ENST00000563488 319 ntBASIC16.14■□□□□ 0.17
COL8A1P27658 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 AL596442.2-201ENST00000610240 980 ntBASIC16.14■□□□□ 0.17
COL8A1P27658 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL8A1P27658 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms