Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.17■□□□□ 0.82
CHRNA1P02708 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.17■□□□□ 0.82
CHRNA1P02708 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CHRNA1P02708 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.17■□□□□ 0.82
CHRNA1P02708 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.17■□□□□ 0.82
CHRNA1P02708 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.17■□□□□ 0.82
CHRNA1P02708 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
CHRNA1P02708 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CHRNA1P02708 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.17■□□□□ 0.82
CHRNA1P02708 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.17■□□□□ 0.82
CHRNA1P02708 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.16■□□□□ 0.82
CHRNA1P02708 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.16■□□□□ 0.82
CHRNA1P02708 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHRNA1P02708 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.16■□□□□ 0.82
CHRNA1P02708 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHRNA1P02708 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CHRNA1P02708 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.16■□□□□ 0.82
CHRNA1P02708 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.16■□□□□ 0.82
CHRNA1P02708 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CHRNA1P02708 AP002469.2-201ENST00000531724 424 ntBASIC20.16■□□□□ 0.82
CHRNA1P02708 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.16■□□□□ 0.82
CHRNA1P02708 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CHRNA1P02708 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CHRNA1P02708 AC004263.2-201ENST00000617183 678 ntBASIC20.16■□□□□ 0.82
CHRNA1P02708 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.16■□□□□ 0.82
CHRNA1P02708 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.16■□□□□ 0.82
CHRNA1P02708 AL161938.1-201ENST00000569833 2180 ntBASIC20.16■□□□□ 0.82
CHRNA1P02708 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CHRNA1P02708 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHRNA1P02708 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHRNA1P02708 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHRNA1P02708 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHRNA1P02708 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHRNA1P02708 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CHRNA1P02708 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHRNA1P02708 AL049812.1-201ENST00000432563 2267 ntBASIC20.15■□□□□ 0.82
CHRNA1P02708 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CHRNA1P02708 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.15■□□□□ 0.82
CHRNA1P02708 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 AP000593.1-201ENST00000393668 712 ntBASIC20.15■□□□□ 0.82
CHRNA1P02708 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.15■□□□□ 0.82
CHRNA1P02708 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.15■□□□□ 0.82
CHRNA1P02708 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.15■□□□□ 0.82
CHRNA1P02708 SLC25A6P4-201ENST00000586535 553 ntBASIC20.15■□□□□ 0.82
CHRNA1P02708 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.15■□□□□ 0.82
CHRNA1P02708 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
CHRNA1P02708 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.15■□□□□ 0.82
CHRNA1P02708 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.15■□□□□ 0.82
CHRNA1P02708 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.15■□□□□ 0.82
CHRNA1P02708 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.15■□□□□ 0.82
CHRNA1P02708 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHRNA1P02708 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.15■□□□□ 0.82
CHRNA1P02708 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CHRNA1P02708 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CHRNA1P02708 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.14■□□□□ 0.81
CHRNA1P02708 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CHRNA1P02708 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CHRNA1P02708 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CHRNA1P02708 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.14■□□□□ 0.81
CHRNA1P02708 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CHRNA1P02708 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHRNA1P02708 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
CHRNA1P02708 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.14■□□□□ 0.81
CHRNA1P02708 AKR1C7P-201ENST00000305623 895 ntBASIC20.14■□□□□ 0.81
CHRNA1P02708 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHRNA1P02708 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.14■□□□□ 0.81
CHRNA1P02708 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.14■□□□□ 0.81
CHRNA1P02708 AC106795.1-205ENST00000512851 1056 ntBASIC20.14■□□□□ 0.81
CHRNA1P02708 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHRNA1P02708 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.14■□□□□ 0.81
CHRNA1P02708 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.14■□□□□ 0.81
CHRNA1P02708 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.14■□□□□ 0.81
CHRNA1P02708 AL121912.1-201ENST00000603683 238 ntBASIC20.14■□□□□ 0.81
CHRNA1P02708 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CHRNA1P02708 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHRNA1P02708 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHRNA1P02708 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
CHRNA1P02708 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHRNA1P02708 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHRNA1P02708 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHRNA1P02708 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHRNA1P02708 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CHRNA1P02708 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
CHRNA1P02708 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHRNA1P02708 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CHRNA1P02708 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHRNA1P02708 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CHRNA1P02708 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms