Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC009113.1-201ENST00000570267 2443 ntBASIC17.77■□□□□ 0.44
SEMA3DO95025 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.77■□□□□ 0.44
SEMA3DO95025 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.77■□□□□ 0.44
SEMA3DO95025 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 AP000593.1-201ENST00000393668 712 ntBASIC17.77■□□□□ 0.44
SEMA3DO95025 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.77■□□□□ 0.44
SEMA3DO95025 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.77■□□□□ 0.44
SEMA3DO95025 AL390955.1-201ENST00000428694 934 ntBASIC17.77■□□□□ 0.44
SEMA3DO95025 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 AC116562.4-202ENST00000641738 218 ntBASIC17.77■□□□□ 0.44
SEMA3DO95025 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.77■□□□□ 0.44
SEMA3DO95025 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SEMA3DO95025 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.77■□□□□ 0.44
SEMA3DO95025 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SEMA3DO95025 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SEMA3DO95025 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.77■□□□□ 0.43
SEMA3DO95025 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
SEMA3DO95025 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.77■□□□□ 0.43
SEMA3DO95025 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SEMA3DO95025 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SEMA3DO95025 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SEMA3DO95025 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SEMA3DO95025 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SEMA3DO95025 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.77■□□□□ 0.43
SEMA3DO95025 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SEMA3DO95025 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SEMA3DO95025 AC034236.2-201ENST00000606662 1610 ntBASIC17.76■□□□□ 0.43
SEMA3DO95025 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.76■□□□□ 0.43
SEMA3DO95025 AL499627.1-201ENST00000569373 2188 ntBASIC17.76■□□□□ 0.43
SEMA3DO95025 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.76■□□□□ 0.43
SEMA3DO95025 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SEMA3DO95025 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SEMA3DO95025 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.76■□□□□ 0.43
SEMA3DO95025 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
SEMA3DO95025 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.76■□□□□ 0.43
SEMA3DO95025 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.76■□□□□ 0.43
SEMA3DO95025 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.76■□□□□ 0.43
SEMA3DO95025 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.76■□□□□ 0.43
SEMA3DO95025 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SEMA3DO95025 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.76■□□□□ 0.43
SEMA3DO95025 AC126763.1-201ENST00000552015 2118 ntBASIC17.76■□□□□ 0.43
SEMA3DO95025 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.76■□□□□ 0.43
SEMA3DO95025 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.76■□□□□ 0.43
SEMA3DO95025 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.76■□□□□ 0.43
SEMA3DO95025 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SEMA3DO95025 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
SEMA3DO95025 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.76■□□□□ 0.43
SEMA3DO95025 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SEMA3DO95025 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SEMA3DO95025 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SEMA3DO95025 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
SEMA3DO95025 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SEMA3DO95025 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 TSPY14P-201ENST00000303979 915 ntBASIC17.75■□□□□ 0.43
SEMA3DO95025 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SEMA3DO95025 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SEMA3DO95025 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.75■□□□□ 0.43
SEMA3DO95025 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.75■□□□□ 0.43
SEMA3DO95025 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.75■□□□□ 0.43
SEMA3DO95025 AP003041.3-201ENST00000527151 707 ntBASIC17.75■□□□□ 0.43
SEMA3DO95025 BX088651.1-201ENST00000540551 451 ntBASIC17.75■□□□□ 0.43
SEMA3DO95025 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.75■□□□□ 0.43
SEMA3DO95025 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.75■□□□□ 0.43
SEMA3DO95025 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.75■□□□□ 0.43
SEMA3DO95025 AC010653.2-201ENST00000623505 997 ntBASIC17.75■□□□□ 0.43
SEMA3DO95025 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.75■□□□□ 0.43
SEMA3DO95025 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.75■□□□□ 0.43
SEMA3DO95025 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SEMA3DO95025 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SEMA3DO95025 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms