Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
LDB2O43679 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.54■□□□□ 0.56
LDB2O43679 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.54■□□□□ 0.56
LDB2O43679 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.54■□□□□ 0.56
LDB2O43679 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 AC012306.2-201ENST00000609350 630 ntBASIC18.54■□□□□ 0.56
LDB2O43679 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.54■□□□□ 0.56
LDB2O43679 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.54■□□□□ 0.56
LDB2O43679 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LDB2O43679 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.54■□□□□ 0.56
LDB2O43679 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.54■□□□□ 0.56
LDB2O43679 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB2O43679 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
LDB2O43679 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
LDB2O43679 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
LDB2O43679 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
LDB2O43679 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.53■□□□□ 0.56
LDB2O43679 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.53■□□□□ 0.56
LDB2O43679 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
LDB2O43679 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LDB2O43679 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB2O43679 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.52■□□□□ 0.56
LDB2O43679 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.52■□□□□ 0.56
LDB2O43679 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
LDB2O43679 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.52■□□□□ 0.56
LDB2O43679 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.52■□□□□ 0.56
LDB2O43679 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
LDB2O43679 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.52■□□□□ 0.56
LDB2O43679 AC009947.2-201ENST00000444014 672 ntBASIC18.52■□□□□ 0.56
LDB2O43679 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.52■□□□□ 0.56
LDB2O43679 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.52■□□□□ 0.56
LDB2O43679 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.52■□□□□ 0.56
LDB2O43679 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.52■□□□□ 0.56
LDB2O43679 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.52■□□□□ 0.56
LDB2O43679 AC112497.1-201ENST00000624824 639 ntBASIC18.52■□□□□ 0.56
LDB2O43679 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
LDB2O43679 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDB2O43679 AL163051.1-201ENST00000569214 1512 ntBASIC18.52■□□□□ 0.56
LDB2O43679 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.52■□□□□ 0.55
LDB2O43679 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LDB2O43679 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
LDB2O43679 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
LDB2O43679 AL354751.1-201ENST00000412768 1863 ntBASIC18.52■□□□□ 0.55
LDB2O43679 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
LDB2O43679 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LDB2O43679 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LDB2O43679 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.51■□□□□ 0.55
LDB2O43679 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 AC099343.3-201ENST00000605834 2503 ntBASIC18.51■□□□□ 0.55
LDB2O43679 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LDB2O43679 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LDB2O43679 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.51■□□□□ 0.55
LDB2O43679 AC104390.1-201ENST00000555663 520 ntBASIC18.51■□□□□ 0.55
LDB2O43679 AL512604.3-201ENST00000569583 964 ntBASIC18.51■□□□□ 0.55
LDB2O43679 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.51■□□□□ 0.55
LDB2O43679 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 AC097493.4-201ENST00000641197 219 ntBASIC18.51■□□□□ 0.55
LDB2O43679 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.51■□□□□ 0.55
LDB2O43679 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms