Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PROM1O43490 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.6■□□□□ 0.41
PROM1O43490 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.6■□□□□ 0.41
PROM1O43490 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PROM1O43490 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.6■□□□□ 0.41
PROM1O43490 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.6■□□□□ 0.41
PROM1O43490 AC133561.5-201ENST00000635547 218 ntBASIC17.6■□□□□ 0.41
PROM1O43490 MYC-208ENST00000641036 567 ntBASIC17.6■□□□□ 0.41
PROM1O43490 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.6■□□□□ 0.41
PROM1O43490 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
PROM1O43490 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
PROM1O43490 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.6■□□□□ 0.41
PROM1O43490 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PROM1O43490 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.6■□□□□ 0.41
PROM1O43490 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PROM1O43490 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PROM1O43490 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PROM1O43490 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
PROM1O43490 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.6■□□□□ 0.41
PROM1O43490 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.6■□□□□ 0.41
PROM1O43490 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.6■□□□□ 0.41
PROM1O43490 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PROM1O43490 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PROM1O43490 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.59■□□□□ 0.41
PROM1O43490 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 HMGA1P5-201ENST00000412453 271 ntBASIC17.59■□□□□ 0.41
PROM1O43490 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.59■□□□□ 0.41
PROM1O43490 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.59■□□□□ 0.41
PROM1O43490 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.59■□□□□ 0.41
PROM1O43490 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PROM1O43490 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PROM1O43490 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.41
PROM1O43490 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
PROM1O43490 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.58■□□□□ 0.41
PROM1O43490 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
PROM1O43490 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.58■□□□□ 0.41
PROM1O43490 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.58■□□□□ 0.41
PROM1O43490 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PROM1O43490 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PROM1O43490 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
PROM1O43490 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.58■□□□□ 0.4
PROM1O43490 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
PROM1O43490 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
PROM1O43490 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PROM1O43490 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.58■□□□□ 0.4
PROM1O43490 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.58■□□□□ 0.4
PROM1O43490 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.58■□□□□ 0.4
PROM1O43490 AC126763.1-201ENST00000552015 2118 ntBASIC17.58■□□□□ 0.4
PROM1O43490 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.58■□□□□ 0.4
PROM1O43490 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
PROM1O43490 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PROM1O43490 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PROM1O43490 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PROM1O43490 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
PROM1O43490 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PROM1O43490 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms