Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA2Q9Y261 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA2Q9Y261 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA2Q9Y261 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.05■□□□□ 0
FOXA2Q9Y261 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA2Q9Y261 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.05■□□□□ 0
FOXA2Q9Y261 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA2Q9Y261 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA2Q9Y261 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
FOXA2Q9Y261 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.05■□□□□ 0
FOXA2Q9Y261 AC026471.1-201ENST00000564629 3026 ntBASIC15.05■□□□□ 0
FOXA2Q9Y261 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.05■□□□□ -0
FOXA2Q9Y261 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
FOXA2Q9Y261 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
FOXA2Q9Y261 B3GAT3P1-201ENST00000471720 806 ntBASIC15.05■□□□□ -0
FOXA2Q9Y261 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.05■□□□□ -0
FOXA2Q9Y261 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.05■□□□□ -0
FOXA2Q9Y261 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.05■□□□□ -0
FOXA2Q9Y261 AP003071.4-201ENST00000562276 1284 ntBASIC15.05■□□□□ -0
FOXA2Q9Y261 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.05■□□□□ -0
FOXA2Q9Y261 DGCR10-201ENST00000609839 495 ntBASIC15.05■□□□□ -0
FOXA2Q9Y261 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.05■□□□□ -0
FOXA2Q9Y261 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
FOXA2Q9Y261 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC15.05■□□□□ -0
FOXA2Q9Y261 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC15.05■□□□□ -0
FOXA2Q9Y261 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC15.05■□□□□ -0
FOXA2Q9Y261 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.05■□□□□ -0
FOXA2Q9Y261 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.05■□□□□ -0
FOXA2Q9Y261 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.05■□□□□ -0
FOXA2Q9Y261 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
FOXA2Q9Y261 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA2Q9Y261 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
FOXA2Q9Y261 HTR7P1-202ENST00000624664 4411 ntBASIC15.05■□□□□ -0
FOXA2Q9Y261 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
FOXA2Q9Y261 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.04■□□□□ -0
FOXA2Q9Y261 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.04■□□□□ -0
FOXA2Q9Y261 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
FOXA2Q9Y261 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC15.04■□□□□ -0
FOXA2Q9Y261 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC15.04■□□□□ -0
FOXA2Q9Y261 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
FOXA2Q9Y261 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 AC112777.1-201ENST00000540175 1423 ntBASIC15.04■□□□□ -0
FOXA2Q9Y261 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC15.04■□□□□ -0
FOXA2Q9Y261 FAM207BP-201ENST00000447172 505 ntBASIC15.04■□□□□ -0
FOXA2Q9Y261 AC116562.2-201ENST00000507042 360 ntBASIC15.04■□□□□ -0
FOXA2Q9Y261 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC15.04■□□□□ -0
FOXA2Q9Y261 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.04■□□□□ -0
FOXA2Q9Y261 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC15.04■□□□□ -0
FOXA2Q9Y261 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.04■□□□□ -0
FOXA2Q9Y261 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA2Q9Y261 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
FOXA2Q9Y261 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.04■□□□□ -0
FOXA2Q9Y261 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
FOXA2Q9Y261 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC15.03■□□□□ -0
FOXA2Q9Y261 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
FOXA2Q9Y261 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
FOXA2Q9Y261 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.03■□□□□ -0
FOXA2Q9Y261 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC15.03■□□□□ -0
FOXA2Q9Y261 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC15.03■□□□□ -0
FOXA2Q9Y261 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC15.03■□□□□ -0
FOXA2Q9Y261 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 AC091390.4-202ENST00000476426 537 ntBASIC15.03■□□□□ -0
FOXA2Q9Y261 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.03■□□□□ -0
FOXA2Q9Y261 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.03■□□□□ -0
FOXA2Q9Y261 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.03■□□□□ -0
FOXA2Q9Y261 REXO1L10P-201ENST00000615707 1290 ntBASIC15.03■□□□□ -0
FOXA2Q9Y261 REXO1L12P-201ENST00000622156 912 ntBASIC15.03■□□□□ -0
FOXA2Q9Y261 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA2Q9Y261 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms