Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.77■□□□□ 0.92
VTA1Q9NP79 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VTA1Q9NP79 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.77■□□□□ 0.92
VTA1Q9NP79 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
VTA1Q9NP79 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VTA1Q9NP79 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.77■□□□□ 0.92
VTA1Q9NP79 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VTA1Q9NP79 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VTA1Q9NP79 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VTA1Q9NP79 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
VTA1Q9NP79 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VTA1Q9NP79 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VTA1Q9NP79 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
VTA1Q9NP79 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.77■□□□□ 0.91
VTA1Q9NP79 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 AC079781.3-201ENST00000449110 356 ntBASIC20.76■□□□□ 0.91
VTA1Q9NP79 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 AC009078.2-202ENST00000463353 338 ntBASIC20.76■□□□□ 0.91
VTA1Q9NP79 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VTA1Q9NP79 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.76■□□□□ 0.91
VTA1Q9NP79 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 NSUN5P1-202ENST00000421140 1535 ntBASIC20.75■□□□□ 0.91
VTA1Q9NP79 NSUN5P2-203ENST00000457352 1529 ntBASIC20.75■□□□□ 0.91
VTA1Q9NP79 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 AC083906.6-201ENST00000641366 219 ntBASIC20.75■□□□□ 0.91
VTA1Q9NP79 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VTA1Q9NP79 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.75■□□□□ 0.91
VTA1Q9NP79 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 AP005901.3-202ENST00000581653 237 ntBASIC20.74■□□□□ 0.91
VTA1Q9NP79 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 AL353801.3-201ENST00000609898 542 ntBASIC20.74■□□□□ 0.91
VTA1Q9NP79 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VTA1Q9NP79 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.74■□□□□ 0.91
VTA1Q9NP79 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VTA1Q9NP79 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VTA1Q9NP79 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VTA1Q9NP79 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms