Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MMP28Q9H239 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC16.4■□□□□ 0.22
MMP28Q9H239 DUSP5P2-201ENST00000426873 1033 ntBASIC16.4■□□□□ 0.22
MMP28Q9H239 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
MMP28Q9H239 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 AC133041.1-202ENST00000642053 222 ntBASIC16.4■□□□□ 0.22
MMP28Q9H239 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.4■□□□□ 0.22
MMP28Q9H239 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
MMP28Q9H239 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MMP28Q9H239 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC16.4■□□□□ 0.22
MMP28Q9H239 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
MMP28Q9H239 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
MMP28Q9H239 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.39■□□□□ 0.21
MMP28Q9H239 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC16.39■□□□□ 0.21
MMP28Q9H239 OR2A1-AS1-201ENST00000462305 773 ntBASIC16.39■□□□□ 0.21
MMP28Q9H239 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC16.39■□□□□ 0.21
MMP28Q9H239 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC16.39■□□□□ 0.21
MMP28Q9H239 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC16.39■□□□□ 0.21
MMP28Q9H239 AC098934.4-201ENST00000564127 592 ntBASIC16.39■□□□□ 0.21
MMP28Q9H239 MIR4651-201ENST00000582622 73 ntBASIC16.39■□□□□ 0.21
MMP28Q9H239 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
MMP28Q9H239 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
MMP28Q9H239 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.39■□□□□ 0.21
MMP28Q9H239 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.39■□□□□ 0.21
MMP28Q9H239 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.39■□□□□ 0.21
MMP28Q9H239 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
MMP28Q9H239 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
MMP28Q9H239 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.39■□□□□ 0.21
MMP28Q9H239 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MMP28Q9H239 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.38■□□□□ 0.21
MMP28Q9H239 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
MMP28Q9H239 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MMP28Q9H239 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MMP28Q9H239 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MMP28Q9H239 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MMP28Q9H239 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.38■□□□□ 0.21
MMP28Q9H239 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
MMP28Q9H239 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC16.38■□□□□ 0.21
MMP28Q9H239 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 PPP1R14BP2-201ENST00000426284 444 ntBASIC16.38■□□□□ 0.21
MMP28Q9H239 AC091874.3-201ENST00000512672 1195 ntBASIC16.38■□□□□ 0.21
MMP28Q9H239 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.38■□□□□ 0.21
MMP28Q9H239 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.38■□□□□ 0.21
MMP28Q9H239 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC16.38■□□□□ 0.21
MMP28Q9H239 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MMP28Q9H239 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.37■□□□□ 0.21
MMP28Q9H239 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms