Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 UNC93B5-201ENST00000530315 699 ntBASIC16.22■□□□□ 0.19
NKX3-1Q99801 AP003097.1-201ENST00000530657 1135 ntBASIC16.22■□□□□ 0.19
NKX3-1Q99801 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 MTMR9LP-203ENST00000426597 1545 ntBASIC16.22■□□□□ 0.19
NKX3-1Q99801 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
NKX3-1Q99801 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
NKX3-1Q99801 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.21■□□□□ 0.19
NKX3-1Q99801 HEIH-201ENST00000623091 1652 ntBASIC16.21■□□□□ 0.19
NKX3-1Q99801 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 AC135776.1-201ENST00000319817 2481 ntBASIC16.21■□□□□ 0.19
NKX3-1Q99801 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 AC026366.1-201ENST00000488803 879 ntBASIC16.21■□□□□ 0.19
NKX3-1Q99801 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 PRKY-204ENST00000533551 1019 ntBASIC16.21■□□□□ 0.19
NKX3-1Q99801 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
NKX3-1Q99801 AC073592.3-201ENST00000625118 1834 ntBASIC16.21■□□□□ 0.19
NKX3-1Q99801 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NKX3-1Q99801 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
NKX3-1Q99801 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
NKX3-1Q99801 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
NKX3-1Q99801 RCC2P6-201ENST00000526625 1557 ntBASIC16.21■□□□□ 0.18
NKX3-1Q99801 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.21■□□□□ 0.18
NKX3-1Q99801 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
NKX3-1Q99801 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.21■□□□□ 0.18
NKX3-1Q99801 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
NKX3-1Q99801 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.21■□□□□ 0.18
NKX3-1Q99801 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
NKX3-1Q99801 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms