Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.52■□□□□ 0.39
PTCHD1Q96NR3 AL357033.4-201ENST00000617703 1807 ntBASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 AL441883.1-201ENST00000566170 1045 ntBASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 AC024243.1-201ENST00000609234 778 ntBASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 AC112497.1-201ENST00000624824 639 ntBASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD1Q96NR3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 KRT18P23-201ENST00000435622 1283 ntBASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 AC092647.4-201ENST00000457211 535 ntBASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 GCSHP2-201ENST00000560971 527 ntBASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 AL590326.2-201ENST00000625139 305 ntBASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 MTMR9LP-203ENST00000426597 1545 ntBASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 AC034236.2-201ENST00000606662 1610 ntBASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD1Q96NR3 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 AC063952.2-201ENST00000498792 1227 ntBASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 LINC01238-205ENST00000567549 1107 ntBASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PTCHD1Q96NR3 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 Z98044.1-201ENST00000632503 1764 ntBASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms