Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA1Q96BD8 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA1Q96BD8 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA1Q96BD8 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA1Q96BD8 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 AP000997.3-201ENST00000623333 2250 ntBASIC19.04■□□□□ 0.64
SKA1Q96BD8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.04■□□□□ 0.64
SKA1Q96BD8 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 UPK3BP1-201ENST00000428678 509 ntBASIC19.04■□□□□ 0.64
SKA1Q96BD8 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 CKBP1-201ENST00000565489 1086 ntBASIC19.04■□□□□ 0.64
SKA1Q96BD8 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.04■□□□□ 0.64
SKA1Q96BD8 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 AC020916.1-201ENST00000587762 1774 ntBASIC19.04■□□□□ 0.64
SKA1Q96BD8 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA1Q96BD8 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 FP475955.4-201ENST00000623131 1990 ntBASIC19.03■□□□□ 0.64
SKA1Q96BD8 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 Z98044.1-201ENST00000632503 1764 ntBASIC19.03■□□□□ 0.64
SKA1Q96BD8 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.03■□□□□ 0.64
SKA1Q96BD8 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA1Q96BD8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.02■□□□□ 0.64
SKA1Q96BD8 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
SKA1Q96BD8 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.02■□□□□ 0.64
SKA1Q96BD8 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.02■□□□□ 0.64
SKA1Q96BD8 AL358472.4-201ENST00000633140 710 ntBASIC19.02■□□□□ 0.64
SKA1Q96BD8 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.02■□□□□ 0.64
SKA1Q96BD8 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA1Q96BD8 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
SKA1Q96BD8 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SKA1Q96BD8 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SKA1Q96BD8 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SKA1Q96BD8 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms