Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 MIR662-201ENST00000384847 95 ntBASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 AC016734.2-201ENST00000624325 1377 ntBASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 LINC01711-201ENST00000598340 967 ntBASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDDC3Q8N4P3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 HEIH-201ENST00000623091 1652 ntBASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 AC093525.10-201ENST00000625130 1569 ntBASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 PVRIG2P-201ENST00000435460 978 ntBASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 AP000347.1-202ENST00000435868 847 ntBASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 NUS1P1-201ENST00000446295 882 ntBASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 KRT8P26-201ENST00000534154 1276 ntBASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.61■□□□□ 0.57
HDDC3Q8N4P3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 AL357033.4-201ENST00000617703 1807 ntBASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 Z98044.1-201ENST00000632503 1764 ntBASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 AP002414.4-201ENST00000589764 1148 ntBASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms