Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 NPAP1P7-201ENST00000613027 823 ntBASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 AC093525.10-201ENST00000625130 1569 ntBASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC60Q8IWA6 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CCDC60Q8IWA6 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 AC016734.2-201ENST00000624325 1377 ntBASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 ATP5G2P1-201ENST00000433580 426 ntBASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 HCG4P8-203ENST00000443049 980 ntBASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 KRT18P56-201ENST00000507275 550 ntBASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC60Q8IWA6 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC60Q8IWA6 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 AC009065.1-201ENST00000564055 1225 ntBASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC60Q8IWA6 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms