Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC22.74■■□□□ 1.23
USP48Q86UV5 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC22.74■■□□□ 1.23
USP48Q86UV5 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 AL160237.2-201ENST00000556165 472 ntBASIC22.74■■□□□ 1.23
USP48Q86UV5 MPI-205ENST00000562606 1052 ntTSL 3 BASIC22.74■■□□□ 1.23
USP48Q86UV5 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC22.74■■□□□ 1.23
USP48Q86UV5 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC22.74■■□□□ 1.23
USP48Q86UV5 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
USP48Q86UV5 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC22.74■■□□□ 1.23
USP48Q86UV5 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC22.73■■□□□ 1.23
USP48Q86UV5 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
USP48Q86UV5 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
USP48Q86UV5 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.73■■□□□ 1.23
USP48Q86UV5 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
USP48Q86UV5 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
USP48Q86UV5 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
USP48Q86UV5 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 TSPY19P-201ENST00000418461 509 ntBASIC22.73■■□□□ 1.23
USP48Q86UV5 TSPY18P-201ENST00000441642 509 ntBASIC22.73■■□□□ 1.23
USP48Q86UV5 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 AC079781.3-201ENST00000449110 356 ntBASIC22.73■■□□□ 1.23
USP48Q86UV5 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC22.73■■□□□ 1.23
USP48Q86UV5 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC22.73■■□□□ 1.23
USP48Q86UV5 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
USP48Q86UV5 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC22.73■■□□□ 1.23
USP48Q86UV5 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC22.73■■□□□ 1.23
USP48Q86UV5 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC22.73■■□□□ 1.23
USP48Q86UV5 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC22.73■■□□□ 1.23
USP48Q86UV5 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
USP48Q86UV5 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC22.72■■□□□ 1.23
USP48Q86UV5 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.72■■□□□ 1.23
USP48Q86UV5 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC22.72■■□□□ 1.23
USP48Q86UV5 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC22.72■■□□□ 1.23
USP48Q86UV5 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
USP48Q86UV5 AC024243.1-201ENST00000609234 778 ntBASIC22.72■■□□□ 1.23
USP48Q86UV5 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC22.72■■□□□ 1.23
USP48Q86UV5 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
USP48Q86UV5 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC22.72■■□□□ 1.23
USP48Q86UV5 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC22.72■■□□□ 1.23
USP48Q86UV5 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
USP48Q86UV5 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC22.71■■□□□ 1.23
USP48Q86UV5 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC22.71■■□□□ 1.23
USP48Q86UV5 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC22.71■■□□□ 1.23
USP48Q86UV5 KRT8P26-201ENST00000534154 1276 ntBASIC22.71■■□□□ 1.23
USP48Q86UV5 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC22.71■■□□□ 1.23
USP48Q86UV5 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC22.71■■□□□ 1.23
USP48Q86UV5 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.71■■□□□ 1.23
USP48Q86UV5 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
USP48Q86UV5 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
USP48Q86UV5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
USP48Q86UV5 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms