Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 RCN1P2-201ENST00000398357 915 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 YBX1P5-201ENST00000509441 847 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AC021087.4-201ENST00000563761 564 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 MIR3687-2-201ENST00000577708 61 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AL138831.2-201ENST00000606564 490 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 MIR3687-1-201ENST00000614492 61 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHD9Q3L8U1 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CHD9Q3L8U1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.64■□□□□ 0.74
CHD9Q3L8U1 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 KRT18P3-201ENST00000451602 1288 ntBASIC19.64■□□□□ 0.73
CHD9Q3L8U1 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.64■□□□□ 0.73
CHD9Q3L8U1 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 AC040169.1-201ENST00000565382 521 ntBASIC19.64■□□□□ 0.73
CHD9Q3L8U1 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.64■□□□□ 0.73
CHD9Q3L8U1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 AC009533.2-201ENST00000543664 586 ntBASIC19.63■□□□□ 0.73
CHD9Q3L8U1 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 AL357033.4-201ENST00000617703 1807 ntBASIC19.63■□□□□ 0.73
CHD9Q3L8U1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 Z82202.1-201ENST00000623446 1880 ntBASIC19.63■□□□□ 0.73
CHD9Q3L8U1 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 Z83851.2-201ENST00000609564 659 ntBASIC19.63■□□□□ 0.73
CHD9Q3L8U1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHD9Q3L8U1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 RPS8P6-201ENST00000426177 609 ntBASIC19.62■□□□□ 0.73
CHD9Q3L8U1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.62■□□□□ 0.73
CHD9Q3L8U1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 FAM8A3P-201ENST00000427218 844 ntBASIC19.62■□□□□ 0.73
CHD9Q3L8U1 HTR5BP-201ENST00000430851 1154 ntBASIC19.62■□□□□ 0.73
CHD9Q3L8U1 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.62■□□□□ 0.73
CHD9Q3L8U1 MTDHP3-201ENST00000594186 672 ntBASIC19.62■□□□□ 0.73
CHD9Q3L8U1 HLA-J-201ENST00000462773 1622 ntBASIC19.61■□□□□ 0.73
CHD9Q3L8U1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.61■□□□□ 0.73
CHD9Q3L8U1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 AC007967.2-201ENST00000432613 625 ntBASIC19.61■□□□□ 0.73
CHD9Q3L8U1 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms