Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC11.48□□□□□ -0.57
HSPG2P98160 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC11.48□□□□□ -0.57
HSPG2P98160 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC11.48□□□□□ -0.57
HSPG2P98160 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 STOM-202ENST00000347359 870 ntTSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC11.47□□□□□ -0.57
HSPG2P98160 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
HSPG2P98160 HEIH-201ENST00000623091 1652 ntBASIC11.47□□□□□ -0.57
HSPG2P98160 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
HSPG2P98160 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
HSPG2P98160 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 LINC01521-201ENST00000504184 1943 ntBASIC11.47□□□□□ -0.57
HSPG2P98160 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC11.47□□□□□ -0.57
HSPG2P98160 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
HSPG2P98160 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 DDT-206ENST00000430101 573 ntTSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC11.47□□□□□ -0.57
HSPG2P98160 DET1-207ENST00000564406 2315 ntTSL 2 BASIC11.47□□□□□ -0.57
HSPG2P98160 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HSPG2P98160 ZNF815P-204ENST00000434898 1737 ntBASIC11.47□□□□□ -0.57
HSPG2P98160 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
HSPG2P98160 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 LAGE3P1-201ENST00000425356 484 ntBASIC11.46□□□□□ -0.57
HSPG2P98160 AC108751.1-201ENST00000490852 363 ntBASIC11.46□□□□□ -0.57
HSPG2P98160 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC11.46□□□□□ -0.57
HSPG2P98160 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC11.46□□□□□ -0.57
HSPG2P98160 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 AC026310.3-201ENST00000625186 2373 ntBASIC11.46□□□□□ -0.57
HSPG2P98160 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC11.46□□□□□ -0.57
HSPG2P98160 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
HSPG2P98160 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 SLBP-205ENST00000488267 987 ntTSL 2 BASIC11.46□□□□□ -0.57
HSPG2P98160 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC11.46□□□□□ -0.57
HSPG2P98160 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC11.46□□□□□ -0.57
HSPG2P98160 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
HSPG2P98160 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 AC034236.2-201ENST00000606662 1610 ntBASIC11.46□□□□□ -0.57
HSPG2P98160 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC11.46□□□□□ -0.57
HSPG2P98160 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HSPG2P98160 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HSPG2P98160 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC11.46□□□□□ -0.58
HSPG2P98160 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC11.46□□□□□ -0.58
HSPG2P98160 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC11.46□□□□□ -0.58
HSPG2P98160 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HSPG2P98160 PDPK2P-202ENST00000562415 1191 ntBASIC11.46□□□□□ -0.58
HSPG2P98160 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC11.46□□□□□ -0.58
HSPG2P98160 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
HSPG2P98160 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HSPG2P98160 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
HSPG2P98160 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HSPG2P98160 PON3-205ENST00000451904 1053 ntTSL 3 BASIC11.46□□□□□ -0.58
HSPG2P98160 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC11.46□□□□□ -0.58
HSPG2P98160 MIR4745-201ENST00000577608 62 ntBASIC11.46□□□□□ -0.58
HSPG2P98160 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
HSPG2P98160 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC11.46□□□□□ -0.58
HSPG2P98160 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
HSPG2P98160 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC11.45□□□□□ -0.58
HSPG2P98160 AC125634.1-201ENST00000438758 1403 ntBASIC11.45□□□□□ -0.58
HSPG2P98160 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC11.45□□□□□ -0.58
HSPG2P98160 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC11.45□□□□□ -0.58
HSPG2P98160 AC073621.1-201ENST00000392730 636 ntBASIC11.45□□□□□ -0.58
HSPG2P98160 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC11.45□□□□□ -0.58
HSPG2P98160 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC11.45□□□□□ -0.58
HSPG2P98160 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC11.45□□□□□ -0.58
HSPG2P98160 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC11.45□□□□□ -0.58
HSPG2P98160 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC11.45□□□□□ -0.58
HSPG2P98160 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC11.45□□□□□ -0.58
HSPG2P98160 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC11.45□□□□□ -0.58
HSPG2P98160 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HSPG2P98160 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HSPG2P98160 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HSPG2P98160 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HSPG2P98160 KRT89P-201ENST00000620027 1478 ntBASIC11.45□□□□□ -0.58
HSPG2P98160 RCC2P3-201ENST00000418112 1537 ntBASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms