Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.4□□□□□ -0.26
PRKDCP78527 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
PRKDCP78527 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC13.4□□□□□ -0.26
PRKDCP78527 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 AC133561.1-201ENST00000568600 2415 ntBASIC13.4□□□□□ -0.26
PRKDCP78527 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
PRKDCP78527 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 FUOM-202ENST00000368551 628 ntTSL 3 BASIC13.4□□□□□ -0.26
PRKDCP78527 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.39□□□□□ -0.27
PRKDCP78527 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.39□□□□□ -0.27
PRKDCP78527 MKNK2P1-201ENST00000437526 628 ntBASIC13.39□□□□□ -0.27
PRKDCP78527 AC022494.1-201ENST00000466044 728 ntBASIC13.39□□□□□ -0.27
PRKDCP78527 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.39□□□□□ -0.27
PRKDCP78527 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC13.39□□□□□ -0.27
PRKDCP78527 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC13.39□□□□□ -0.27
PRKDCP78527 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.39□□□□□ -0.27
PRKDCP78527 LSM12-202ENST00000585388 942 ntTSL 3 BASIC13.39□□□□□ -0.27
PRKDCP78527 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.39□□□□□ -0.27
PRKDCP78527 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
PRKDCP78527 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC13.39□□□□□ -0.27
PRKDCP78527 AP002414.3-201ENST00000589352 1468 ntBASIC13.39□□□□□ -0.27
PRKDCP78527 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.39□□□□□ -0.27
PRKDCP78527 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 TSEN15P1-201ENST00000423257 515 ntBASIC13.39□□□□□ -0.27
PRKDCP78527 LAGE3P1-201ENST00000425356 484 ntBASIC13.39□□□□□ -0.27
PRKDCP78527 UGT1A2P-201ENST00000454886 866 ntBASIC13.39□□□□□ -0.27
PRKDCP78527 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 AL512353.2-201ENST00000448759 1962 ntBASIC13.39□□□□□ -0.27
PRKDCP78527 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.39□□□□□ -0.27
PRKDCP78527 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 AC004817.3-201ENST00000602957 2129 ntBASIC13.39□□□□□ -0.27
PRKDCP78527 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC13.39□□□□□ -0.27
PRKDCP78527 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC13.39□□□□□ -0.27
PRKDCP78527 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.39□□□□□ -0.27
PRKDCP78527 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PRKDCP78527 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.39□□□□□ -0.27
PRKDCP78527 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
PRKDCP78527 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
PRKDCP78527 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC13.38□□□□□ -0.27
PRKDCP78527 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC13.38□□□□□ -0.27
PRKDCP78527 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.38□□□□□ -0.27
PRKDCP78527 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
PRKDCP78527 AC105339.3-201ENST00000560043 636 ntBASIC13.38□□□□□ -0.27
PRKDCP78527 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.38□□□□□ -0.27
PRKDCP78527 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
PRKDCP78527 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
PRKDCP78527 KRT89P-201ENST00000620027 1478 ntBASIC13.38□□□□□ -0.27
PRKDCP78527 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 AC073621.1-201ENST00000392730 636 ntBASIC13.38□□□□□ -0.27
PRKDCP78527 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.38□□□□□ -0.27
PRKDCP78527 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
PRKDCP78527 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC13.38□□□□□ -0.27
PRKDCP78527 C20orf181-201ENST00000623918 480 ntBASIC13.38□□□□□ -0.27
PRKDCP78527 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC13.38□□□□□ -0.27
PRKDCP78527 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PRKDCP78527 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC13.38□□□□□ -0.27
PRKDCP78527 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
PRKDCP78527 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.38□□□□□ -0.27
PRKDCP78527 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 AC104390.1-201ENST00000555663 520 ntBASIC13.37□□□□□ -0.27
PRKDCP78527 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
PRKDCP78527 AL139288.1-201ENST00000623748 933 ntBASIC13.37□□□□□ -0.27
PRKDCP78527 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC13.37□□□□□ -0.27
PRKDCP78527 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.37□□□□□ -0.27
PRKDCP78527 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms